Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01199 ATGGCGGTTTCTTCTCTCTGTGTTACTCCTCTTTCTCTCTCCAATTCATCCCCCTCTTTGTCTTCCAAGCCAAAGTTCCCATCTTTGTGCTTTCTCTCGGGTAACACGTTGAGGGTCACGTGCCCAAAACCTCTGCACTCTTCAACTGTGGTTCATGTTGCACCAGAAGTGTTGGATTCTTCCCCTGATCCCCTAGACCCACCTCCAGAAACCCTTGATGATGACTCTGACCCCACCACCTTTCAGGTTGGTGACTTGGGGACTCCAAGCACTTCGGCAATCAGCATTGGCGCTGACGCAGATGCAATGGCACCAAAGCAGAAAATTAGGATCAAGCTAAGATCTTACTGGGTTCCCTTGATTGAGGATTCCTGCAAGCAGATATTAGATGCAGCAAGGACTACCAATGCAAAAACTATGGGTCCTGTGCCATTACCAACCAAGAAGCGAATCTACTGTGTTCTTAAATCCCCACACGTTCATAAAGATGCTCGGTTCCATTTTGAGATCAGAACTCATCAGCGACTCATTGATATCCTATATCCTACAGCTCAAACAATAGATTCTCTGATGCAACTTGATCTTCCTGCTGGTGTTGATGTGGAGGTCAAGCTCTAG 618 0.4693 MAVSSLCVTPLSLSNSSPSLSSKPKFPSLCFLSGNTLRVTCPKPLHSSTVVHVAPEVLDSSPDPLDPPPETLDDDSDPTTFQVGDLGTPSTSAISIGADADAMAPKQKIRIKLRSYWVPLIEDSCKQILDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01199 205 PANTHER BNAC05G40270D PROTEIN 1 205 - -
Cca09g01199 205 Hamap 30S ribosomal protein S10 [rpsJ]. 106 205 IPR001848 GO:0003735|GO:0005840|GO:0006412
Cca09g01199 205 ProSitePatterns Ribosomal protein S10 signature. 132 147 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cca09g01199 205 Pfam Ribosomal protein S10p/S20e 110 204 IPR027486 -
Cca09g01199 205 PRINTS Ribosomal protein S10 family signature 108 121 IPR001848 GO:0003735|GO:0005840|GO:0006412
Cca09g01199 205 PRINTS Ribosomal protein S10 family signature 143 158 IPR001848 GO:0003735|GO:0005840|GO:0006412
Cca09g01199 205 PRINTS Ribosomal protein S10 family signature 164 178 IPR001848 GO:0003735|GO:0005840|GO:0006412
Cca09g01199 205 MobiDBLite consensus disorder prediction 56 90 - -
Cca09g01199 205 MobiDBLite consensus disorder prediction 75 90 - -
Cca09g01199 205 SUPERFAMILY Ribosomal protein S10 108 205 IPR036838 -
Cca09g01199 205 Gene3D Ribosomal protein S10 domain 97 205 IPR036838 -
Cca09g01199 205 SMART Ribosomal_S10_2 110 204 IPR027486 -
Cca09g01199 205 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 1 205 IPR001848 GO:0003735|GO:0005840|GO:0006412
Cca09g01199 205 TIGRFAM rpsJ_bact: ribosomal protein uS10 107 204 IPR001848 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01199 107 205 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 31.000 2.66e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01199 K02946 - gmx:100306286 340.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01199 09 33811781 33815626 Cca09g01199 09 33811781 33815626 ECH