Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01187 ATGTCGTTTGTCGCATCACTCCATTCTCTTAGACACTTTGAAAGTAGTTTACTGACATTTTTGGTGAAGCCGGTTTTCATGCATGGCTTATCTTGTTTCCTTCATCTAGTGTTGCTAGTAGTGCTTTCAGTGTCACTGGTGTGGAAGAAAGTCACAGTTGGAGCCAAAGAATGTTCCAGAGAGAAAATTAATAATACCTTGTTTTCAAGGACTAGGCTTTGCTTTCTGGTTGTTTCTGCTTTCAATCTTCTACTCTTTTTGTTTGGTTACTTTTCTTGGTTTAGAAATGGTTGGTCAGAAGAGAAGCTTGTGACCCTTTTGGATTTGGTGCTCAAAACGGTTGCTTGGGGTGTCAGTGGTGTTTGCTTGCAAAGGGCATTCTTCATTTCAAGGGAAAGAATATTTTCATTCTTCTTTAGAGCTTGGTGTGTGTTCTATCTCTCTGTTTCCGGTTATTGCTTTACAGTGGACATTGTTCTCTATGAAAAGCATGCTGCTGTGCCTATTCAGTGCTTGGTTTCTAATGTTTTCTCTGTTTGTGTGGGTTTGTTCTTCTGTTACTTGGGAAATTTTGTGAAAAATGAGGGTGGAGTGGGAGATAGTACTCTTCAAGAATCTCTTTTGAATGGTGGTTCAAAAGAGAGTGATATGTTAGGGACAAAAGAGATCAAGGGGAGTGACACTGTTACCCCTTACTCTAATGCTGGAATTTTTTGCCTTCTTACCTTTTCTTGGGTTGGTCCTTTGATTGCTGTTGGAAAGAAGAAGACTTTGGACCTTGAGGATGTTCCTCAACTTGACAAAAGAGACAGTTTAATTGGAGCTTTTCCAACTTTTAGGGATAAGCTTGATGCATGTTGTGGAGGAAGTAACACAGTGACCACACTTAAGTTAGTGAAGTCATTAGCATTCTCAGCCTGGAAAGAGATAATTTTCACAGCTATCCTTGCATTGATAAATACCCTGGCTTCTTTTGTTGGTCCCTATCTTATTGATGGTTTTGTTCAATACCTTAATGGAAAACAAAAATTTGAAAATGAAGGCCTTGTTTTGGTGTTTGCATTTTCTGTGGCAAAGCTTGTGGAGTGCCTGGCGCATAGGCAATGGTTCTTTAGGTTGCAGCAAGTTGGAATACGAATTCGAGCACTGCTTGTGGCAATCATATATGATAAAGCTTTGAATCTTTCATTCCAATCCAAGCAAGGCCACACTACTGGAGAAATAATAAACTTCATGAGTGTTGATGCAGAAAGAGTTGGTGAGTTCAGTTGGCACCTACATGATTTGTGGTTAGTAGTCCTACAGGTTTTTGTAGCCTTGTTGATTTTGTATAGAAACCTTGGCCTTGCTTCAATTGCTGGCTTTGTTGCAATTTTCATTGTAATGTGGGCAAACATTCCCTTGGGTTCAACCCAAGAGAAGTTTCAGAACAAGTTGATGGAGTCAAAAGATGCGAGAATGAAAGCAACATCTGAGATTTTAAGGAATATGAGGATTCTCAAGCTGCAAGGATGGGAAATGAAGTTTTTGTCTAAGATAACTGAACTCAGAAAGATTGAGCAAGGTTGGTTAAAAAAATTTATATACACTATAGCCGTGACCATATTTGTGTTCTGGTGTGCCCCAGCATTTGTGTCAGTGGTTACGTTTGGTACTTGTTTGCTTATAGGGATCCCCCTCGAGTCAGGGAAGATCTTATCTGCACTTGCAACATTCCAGATTCTCCAAGAACCCATTTATAATCTTCCAGACACAATTTCAATGATGGCACAAACTAAGGTTTCTCTTGACAGGATTGCATCTTTCCTTCGTCTGGATGAGATGCAATCTGATATTGTGGAGAAGCTTCCACCAGGTAGTTCTAATGTAGCAATTGAAGTAGTTGATGGAAATTTTTCTTGGGATTTAGCTTCCCCAAGAACAACATTGCAAAATATAAATCTCAGAGTTTTTCATGGCATGAGGGTTGCTGTTTGTGGCACTGTTGGGTCAGGCAAGTCTACTTTACTTTCTTGTATATTGGGGGAAGTACCAAAGAAATCAGGGATCCTGAAGGTGTGTGGAAGAAAGGCCTATGTAGCTCAGTCACCATGGATACAAGGTAGCAAGATTGAGGATAATATATTGTTTGGAAAGGATATGGAAAGGGAAAGGTATGAGAAGGTCCTTGAAGCTTGTTGCCTAAAGAAGGATCTAGATATCTTGTCATTTGGAGATCAAACTATTATAGGAGAGAGGGGTATAAATTTGAGTGGTGGACAGAAACAAAGAATACAAATTGCTCGTGCTCTATATCAAGATGCTGATATATATCTATTTGATGATGTGTTTAGTGCTGTGGATGCTCATACAGGATCTCACCTTTTTAAGGAATGCTTACTGGGCCTTCTAAGTTCAAAAACAGTGGTTTATGTCACTCATCAAGTAGAGTTCTTACCTGCTGCTGACCTTATCTTGGTCATGAAAGATGGGAAGATTACTCAATGTGGAAAATATAATGATCTTCTCAACTCAGGTACTGATTTTATGGAACTTGTTGGTGCTCATAAAGAAGCTTTGTCTGCAATTGATTCGTTAGATGGAGGGACAGCATCTGATAAAATAAGTATAACACAGAATGATGTACGTGTCTCTCTTTCTCATGGTGTTGAAGAAATAGAAAGCAAAGATGTGCAAAATGATGGAAAAGATGATAAATGTGATCCAAAAGGCCAACTTGTTCAAGAAGAAGAAAGGGAGAAAGGTAAAGTTGGGTTTTCAGTCTATTGGAAATATATCACAGCAGCGTATGGAGGAGTACTTATACCACTCATATTGTTGGCTGAAATTTTGTTTCAACTTCTTCAAATTGGAAGCAACTATTGGATGGCTTGGGCAACTCCTATCTCAAAAGATTCTGAGCCACCTGTTACAGGAAGTATGCTTATAGTTGTGTATTTAGCTTTGGCCATAGGAAGTTCTGTTTGTGTCCTTGCAAGAGCAACACTTGTTGCCACAGCTGGTTACAAGACAGCTACTTTACTCTTCAAAAACATGCATTTCTGCATCTTCCGTGCTCCAATGTCATTTTTTGATGCCACCCCAAGTGGGAGAATCCTTAATAGGGCTTCTACTGACCAAAGTGCAGTGGATGTAGACATTCCTTTTCAAATTGGAGCATTTGCTTTCTCTGTGATCCATCTTCTTGGAATTATAATGGTTATGTCTCAAGTTGCATGGCAGGTTTTCACTGTCTTTATTCCTATTACAGCAATCGGCATCTGGTATCAGCAATATTATTTACCATCAGCCCGGGAACTATCACGTTTAGCTGGGGTATGCAAAGCTCCTATCATTCAACACTTTGCTGAAACAATATCAGGTGCATCAACCATCAGGAGCTTTGATCAGGTGCCAAGATTTCAGCAAACAAATATGAAACTGGTGGATGGATATTCTCGCCCCAAGTTCAACAATGCTGGTGCAATGGAATGGTTGTGCTTCCGATTAGATATGTTGTCTTCTATCACATTTTCCTTTTGCTTGATATTATTGGTATCTATTCCACAAGGATTCCTAAATTCAGGTGTTGCTGGTTTAGCTGTAACCTATGGCCTTAATCTGAACATTATACAATCATGGATGATATGGGAACTTTGCAACTTGGAGACCAAAATTATATCAGTAGAAAGAATAATTCAGTATACTTCCATTCCTAGTGAGCCTCCTCTTGTTTTAGAAAAAAACCAGCCACATCATTCTTGGCCATCATATGGAAGGATTGATATTCATAACTTGAAGGTACGTTATGGTCCACATATGCCATTTGTGTTGCATGGCCTTACATGCACATTTCAAGGAGGACTTAAAACTGGAATTGTTGGGAGAACAGGAAGTGGTAAATCAACTCTCATACAAACAATTTTCCGAATTATTGAGCCTACTGTTGGGAGAATTATGATAGATGGCATCAACATCTCTTCCATTGGACTTTATGATTTGAGGTCAAGACTGAGCATTATTCCTCAGGATCCAACCATGTTTGAGGGTACTGTGAGAAGCAATCTGGACCCACTTGAAGAGTACACAGATGAACAAATTTGGGAGGCACTTGATAAGTGTCAACTTGGAGAGGAAGTTAGAAGGAAAGAAGGAAAACTAGACTCTGCAGTTTGTGAGAATGGAGAGAATTGGAGTATGGGGCAAAGGCAATTGGTCTGCCTTGGCAGGGTGTTGCTTAAGAAGAGTAAGGTCCTGGTGCTAGATGAAGCTACTGCATCTGTTGACACAGCTACAGATAATTTGATCCAGCTAACTCTTAGGCAACATTTCTGTGATTGCACAGTCATTACCATTGCACATAGAATAAATTCAGTCATTTATAGTGATATGGTTCTACTACTTAATCAAGGACTTATTGAGGAGTATGATTCTCCAACAAAGTTGCTAGAGGACAAGTTATCTTCTTTTGCTCAGCTTGTTGCAGAGTATTCCACTAGGTCCAATTCCAATTTTGATCTACTAAAATAG 4509 0.3943 MSFVASLHSLRHFESSLLTFLVKPVFMHGLSCFLHLVLLVVLSVSLVWKKVTVGAKECSREKINNTLFSRTRLCFLVVSAFNLLLFLFGYFSWFRNGWSEEKLVTLLDLVLKTVAWGVSGVCLQRAFFISRERIFSFFFRAWCVFYLSVSGYCFTVDIVLYEKHAAVPIQCLVSNVFSVCVGLFFCYLGNFVKNEGGVGDSTLQESLLNGGSKESDMLGTKEIKGSDTVTPYSNAGIFCLLTFSWVGPLIAVGKKKTLDLEDVPQLDKRDSLIGAFPTFRDKLDACCGGSNTVTTLKLVKSLAFSAWKEIIFTAILALINTLASFVGPYLIDGFVQYLNGKQKFENEGLVLVFAFSVAKLVECLAHRQWFFRLQQVGIRIRALLVAIIYDKALNLSFQSKQGHTTGEIINFMSVDAERVGEFSWHLHDLWLVVLQVFVALLILYRNLGLASIAGFVAIFIVMWANIPLGSTQEKFQNKLMESKDARMKATSEILRNMRILKLQGWEMKFLSKITELRKIEQGWLKKFIYTIAVTIFVFWCAPAFVSVVTFGTCLLIGIPLESGKILSALATFQILQEPIYNLPDTISMMAQTKVSLDRIASFLRLDEMQSDIVEKLPPGSSNVAIEVVDGNFSWDLASPRTTLQNINLRVFHGMRVAVCGTVGSGKSTLLSCILGEVPKKSGILKVCGRKAYVAQSPWIQGSKIEDNILFGKDMERERYEKVLEACCLKKDLDILSFGDQTIIGERGINLSGGQKQRIQIARALYQDADIYLFDDVFSAVDAHTGSHLFKECLLGLLSSKTVVYVTHQVEFLPAADLILVMKDGKITQCGKYNDLLNSGTDFMELVGAHKEALSAIDSLDGGTASDKISITQNDVRVSLSHGVEEIESKDVQNDGKDDKCDPKGQLVQEEEREKGKVGFSVYWKYITAAYGGVLIPLILLAEILFQLLQIGSNYWMAWATPISKDSEPPVTGSMLIVVYLALAIGSSVCVLARATLVATAGYKTATLLFKNMHFCIFRAPMSFFDATPSGRILNRASTDQSAVDVDIPFQIGAFAFSVIHLLGIIMVMSQVAWQVFTVFIPITAIGIWYQQYYLPSARELSRLAGVCKAPIIQHFAETISGASTIRSFDQVPRFQQTNMKLVDGYSRPKFNNAGAMEWLCFRLDMLSSITFSFCLILLVSIPQGFLNSGVAGLAVTYGLNLNIIQSWMIWELCNLETKIISVERIIQYTSIPSEPPLVLEKNQPHHSWPSYGRIDIHNLKVRYGPHMPFVLHGLTCTFQGGLKTGIVGRTGSGKSTLIQTIFRIIEPTVGRIMIDGINISSIGLYDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDKCQLGEEVRRKEGKLDSAVCENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQLTLRQHFCDCTVITIAHRINSVIYSDMVLLLNQGLIEEYDSPTKLLEDKLSSFAQLVAEYSTRSNSNFDLLK 1502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01187 1502 Pfam ABC transporter transmembrane region 311 578 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca09g01187 1502 Pfam ABC transporter transmembrane region 937 1189 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca09g01187 1502 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 85 1502 - -
Cca09g01187 1502 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 85 1502 - -
Cca09g01187 1502 Gene3D - 605 860 IPR027417 -
Cca09g01187 1502 SUPERFAMILY ABC transporter transmembrane region 299 599 IPR036640 GO:0005524|GO:0016021
Cca09g01187 1502 CDD ABC_6TM_ABCC_D1 312 599 IPR044746 GO:0140359
Cca09g01187 1502 Pfam ABC transporter 1271 1419 IPR003439 GO:0005524
Cca09g01187 1502 Pfam ABC transporter 643 776 IPR003439 GO:0005524
Cca09g01187 1502 Gene3D - 1237 1490 IPR027417 -
Cca09g01187 1502 Gene3D ABC transporter type 1, transmembrane domain 898 1235 IPR036640 GO:0005524|GO:0016021
Cca09g01187 1502 Gene3D ABC transporter type 1, transmembrane domain 290 604 IPR036640 GO:0005524|GO:0016021
Cca09g01187 1502 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1254 1488 IPR003439 GO:0005524
Cca09g01187 1502 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 937 1217 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca09g01187 1502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1243 1478 IPR027417 -
Cca09g01187 1502 ProSitePatterns ABC transporters family signature. 750 764 IPR017871 GO:0005524
Cca09g01187 1502 SMART AAA_5 652 825 IPR003593 -
Cca09g01187 1502 SMART AAA_5 1280 1465 IPR003593 -
Cca09g01187 1502 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 311 591 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca09g01187 1502 CDD ABC_6TM_ABCC_D2 935 1229 IPR044726 GO:0140359
Cca09g01187 1502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 622 847 IPR027417 -
Cca09g01187 1502 CDD ABCC_MRP_domain1 625 825 - -
Cca09g01187 1502 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 625 848 IPR003439 GO:0005524
Cca09g01187 1502 Coils Coil 1500 1502 - -
Cca09g01187 1502 CDD ABCC_MRP_domain2 1252 1472 - -
Cca09g01187 1502 SUPERFAMILY ABC transporter transmembrane region 934 1235 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01187 Cca-Chr9 33499626 33507190 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01187 625 882 Calmodulin-binding Proteins AT2G36910 28.417 1.74e-24 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01187 - K05666 gmx:100775358 2536.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01187 09 33499626 33507190 Cca09g01187 09 33499626 33507190 ECH