Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01184 ATGTTCTCACTCTTCTCTTGCTACTTTTCTTCTTCCACGATGCACCGTGGAATTGATTTTCTACTGCAACCCATTTTCACACGTGAGGTATCTGCTTCACTACACCTAGTCTTGTTACTTGTGCTTGTTCTGTCTTGGGTATGGAAGAAAGTGCACGTGGACCATAGAGAGAAGAGTGAAAGAAATGGAGTCCATAATTCTGGTTTCTTGTACTACAAACTCAGTCTGGTTTGTAGCTTAGTGATATGTGTGTTCAACTTTTTGTTGTGCTTAGTAAGCTACTTTTACTTGTATAAACATGATGGTTCAGAGGAGCTTGTAGCACTTTCTGATTTGGCTCTCAAAACATTTGTTTGGGGTGCTATTTGTGTTTATTTACATTCTACAAACTCCAAGGCTCAGGATCCGAGTTTGCCATGTTTGTTGAGAATTTGGTGCGGGGTCTATGCCTTTTTTTCTTGTTCTTGTCTTGTTATCGACTTTGTAGTCTATGGAAACCATGTTTTATTGCCAGTTATGTACCTTGTTTCTGATATTGGATCCTCTATCACGGGTTTATTTATGTGTTATGTGGGATGTTGTGTTAACAATATGGCTAAGCTTGCCCCTCTTGAAGAGCCCCTTTTGAATGGTGACTCTCGGGTAAGCAACAATTCTGACCCCAGTAAGACTAGAGGAAATGAAAATTTAACCCTTTATTCAAATGCTGGATTTTTCAGCATTCTTACTTTCTCATGGATTAGTCCATTAATAACTCTAGGCAATGGGAAAACTCTAGATCACGAGGACCTCCCACTTCTTGCGACTGATGATAGTGCCTATGGGATTTATCCAACTTTTAGAAGCAGACTTGAGTCAGAGTGTGGTAGTGTTAGGAGAGTGACCACTCTTAAGCTCGCAAAGGTTTTATTCTTGTCAACGTGGCAAGGGATCCTTTTATCAGGTATATTTGCATTCCTATATGCATGTGCTTCTTATGTTGGACCCTTTCTTATTGACATCTGTGTTCAATACCTCAATGGGGAACACAAGTTTAAAAATGAAGGCTATGTTTTGGCTATGGCGTTTGTTGCTGCAAAGCTTGTGGAGGGACTTTCAGAGAGGCACTACATGTTCAGGTACCAGCAGGTGGGGGTAAGGATGCAATCAAAGTTGGTGGCAATGATCTATACTAAAGGGTTGATTCTTTCATGCCAATCAAAGGAGGGTCACAGCACAGGGGAAATCATTAACTTAATGACTGTTGATGCTGAAAGGATTGGTGAATTTTGTTGGTACATGCATCAACCATGGATGTGTGTTCTTCAAGTTGCTTTGGCACTGTTTATATTGTATAGAAGTGTGGGGGTTGCTTCTTTAGCTGCTCTTGCTGCCACTGTAATTGTGATGTTGGTAAACCTTCCCGTGGCATCATTGCAAGAAAAGTTCCAAGGCAAGGTAATGGAGTTCAAAGATAAAAGAATGAAGGCTACATCTGAGACTCTGAACAATATGAGGATTCTAAAGCTGCAAGCATGGGAGATGAAGTTCTTATCAAAGATTATTGAGCTTAGGAAGACTGAGGAGATATGGCTAAAGAAAGTTCTGGTTGGTACAACAATTATTAGATTTCTCATCCATAATGCCCCAACTTTCGTTGCTGTGGTTACTTTTGGGACTTGTGTGCTTATAGGCATCCCACTAGAATCAGGGAAGGTCTTATCTGCACTTGCAACATTCAGAATTCTTCAAATGCCCATCTACGTTCTTCCTGACACGATTTCAATGATTGCACAAACTAAGGTTTCGCTTGAAAGGATTGCATCATTTCTTTGTCTAGACGAGTTGCAGAGTGATGTAGTAGAGAAGCTTCCGTGGGGTAGTTCAGATAAGGCAATTGAATTAGTAGATGGTAATTTCTCGTGGGATTTATCTTCCCCTAATACAACATTGAAAGACATAAATCTAACAGTTTTTCATGGTATGAGGGTTGCTGTATGTGGTACTGTTGGATCAGGCAAGTCTAGTTTACTTTCTTGTATAATAGGGGAAGTACCAAAGATAACTGGGACCCTGAAGATATGTGGAACAAAGGCTTATGTGTCTCAATTGCCGTGGATACAAAGTGGCAATATAGAAGATAACATATTATTTGGTAAAGAGATGGAGAGGGAAAAGTATGAGAAGGTGCTAGAAGCATGTTCCTTGACAAGAGACCTTGAGGTTCTACCATTTGGTGATCAGACCATTATTGGAGAAAAGGGAATCAATTTGAGTGGTGGACAGAAGCAAAGGGTACAAATAGCCCGTGCTCTATACCAAGATGCTGATATATATCTCTTTGATGATCCCTTCAGTGCTGTGGATGCTCATACAGGATCCCATCTCTTTAAGGAGGGCTTGCTTGGCCTTTTGAAATCAAAAACTGTGATATACATTACTCATCAAGTAGAGTTCTTACCTGATGCTGATCTAATATTGGTCATGAGAGATGGAAGGATAACTCAATCAGGAAAATACAATGACATTCTCCAGACAGGCACTGATTTTATGGAACTTGTAGGTGCACACAAAGCAGCTTTATCTTCAATTAAGTCCTTGGAGAGAAGACCAACATTTAAAATATCAAGCACCACCAAAGAGGACACAAATTCATTAAGTGATTTTGAACTTGAGCATAATGTGGAAAACATATATGATCAAAATGATAAGTTAGATGACATGGTTGAGGTCAAAGGACAACTTGTTCAAGAAGAAGAACGGGAAAAGGGTAGAGTTGGGTTTAAAGTATACTGGAAATACATCATAACAGCCTATGGAGGAGCTCTTGTACCCTTCATATTACTTTCACAAACGCTCACTGTGGGGTTTCAGGTTGCAAGCAATTATTGGATGACTGTGGCAACTCCTGTTTCAGCAACTGCAGAACCTGACGTTGGAAGCTTTACACTTATGGTTGTCTATGTTGCTTTGGCAATTGGAAGCTCCATTTTCACCTTTGCCAGAGCATTTCTTTCTGTGGTAGCTGGATACAAGACAGCCACTATGCTTTTCAACAAAATGCATTTGGGCATTTTTCGTGCACCAATATCATTTTTTGATGCCACGCCAAGTGGGCGAATCCTTAATAGAGCTTCAACAGACCAAAGCACACTAGATATGTACATTTCAAATATATTATGGGCAATTACCTTCAATCTGGTTCAACTCTTGGGAAATATTACTGTGATATCTCAAGCTGTATGGCAGGTGTTTATAATATTGATACCTGTCATGGCAGCATGCATATGGTACCAGCGATATTATTCTGCATCAGCAAGGGAATTGGCTCGATTAGTTGGTACATGCCAAGCTCCAGTTATACAACATTTTTCTGAAACAATTTCTGGATCAACAACCATAAGATGTTTTGAGCAAGAATCAAGATTTAATGACATGAATATGAAATTGATAGACAGATATTCCCAACCCAAATTATACAGTGCTGCTGCAATGGAATGGCTGAATTTCAGAATGGATATTTTGTCAACTCTCACATTTGCCTTTTGTTTGGTTTTCTTGATATCTTTTCCAAATTCAATGACTGCTCCTGGAATTGCGGGATTGGCTGTGACATATGGACTTAATCTAAATGCTCTACAAGCTAATATAGTCTGGTTTCTTTGTAATTTGGAGAACAAAATTATATCTGTTGAAAGAATACTTCAGTACACATCCCTTCCTAGTGAAGCTCCTCTTGTAATTACAGACAACAAACCGGATAATTCTTGGCCATCATTTGGAGAGGTTCATATCCGGGATTTACAGGTTCGATATGCTCCTCACTTGCCTATTGTTTTAAGAGGTCTTACTTGCACTTTTACTGCTGGAGCAAAAACTGGCATTGTGGGAAGAACAGGAAGTGGAAAAACAACTCTAGTTCAAATACTTTTCCGACTTATTGAACCTGTTGCTGGACAAATATTGATAGACAGCATTAACATCTCTTTGATTGGAATTCATGATTTGCGTTCCAGACTAAGCATTATTCCTCAAGATCCTACAATGTTTGAAGGGACTGTAAGAACCAACCTGGATCCACTTGAAGAGTACACAGATGAAAAGATCTGGGAGGCTCTAGATATGTGCCAACTTGGAGATGAAGTAAGGAAAAAAGAAGGGAAGCTTGATTCCAAAGTTACTGAGAATGGAGAAAATTGGAGTATGGGTCAAAGGCAATTGGTCTGCCTTGGCCGTGTTCTACTCAAGAAAAGCAAGATCTTGGTGCTTGATGAAGCTACTGCATCGGTTGATACAGCCACAGATAATATTATTCAGCAAACTGTTAAGCAACATTTTTCCGAATGCACAGTCATTACCATTGCTCATAGGATAACTTCAATCATCGATAGTGACATGGTGCTGTTTCTAAATCAAGGGTTGATTGAGGAATATGATTCGCCAAAGAAACTGCTCAAGAACAAATCTTCATCTCTTGCTCAACTAGTTGCAGAATACACGAGGAGGTCAAACTCTGGTTTTGGAAATTAA 4509 0.3959 MFSLFSCYFSSSTMHRGIDFLLQPIFTREVSASLHLVLLLVLVLSWVWKKVHVDHREKSERNGVHNSGFLYYKLSLVCSLVICVFNFLLCLVSYFYLYKHDGSEELVALSDLALKTFVWGAICVYLHSTNSKAQDPSLPCLLRIWCGVYAFFSCSCLVIDFVVYGNHVLLPVMYLVSDIGSSITGLFMCYVGCCVNNMAKLAPLEEPLLNGDSRVSNNSDPSKTRGNENLTLYSNAGFFSILTFSWISPLITLGNGKTLDHEDLPLLATDDSAYGIYPTFRSRLESECGSVRRVTTLKLAKVLFLSTWQGILLSGIFAFLYACASYVGPFLIDICVQYLNGEHKFKNEGYVLAMAFVAAKLVEGLSERHYMFRYQQVGVRMQSKLVAMIYTKGLILSCQSKEGHSTGEIINLMTVDAERIGEFCWYMHQPWMCVLQVALALFILYRSVGVASLAALAATVIVMLVNLPVASLQEKFQGKVMEFKDKRMKATSETLNNMRILKLQAWEMKFLSKIIELRKTEEIWLKKVLVGTTIIRFLIHNAPTFVAVVTFGTCVLIGIPLESGKVLSALATFRILQMPIYVLPDTISMIAQTKVSLERIASFLCLDELQSDVVEKLPWGSSDKAIELVDGNFSWDLSSPNTTLKDINLTVFHGMRVAVCGTVGSGKSSLLSCIIGEVPKITGTLKICGTKAYVSQLPWIQSGNIEDNILFGKEMEREKYEKVLEACSLTRDLEVLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEGLLGLLKSKTVIYITHQVEFLPDADLILVMRDGRITQSGKYNDILQTGTDFMELVGAHKAALSSIKSLERRPTFKISSTTKEDTNSLSDFELEHNVENIYDQNDKLDDMVEVKGQLVQEEEREKGRVGFKVYWKYIITAYGGALVPFILLSQTLTVGFQVASNYWMTVATPVSATAEPDVGSFTLMVVYVALAIGSSIFTFARAFLSVVAGYKTATMLFNKMHLGIFRAPISFFDATPSGRILNRASTDQSTLDMYISNILWAITFNLVQLLGNITVISQAVWQVFIILIPVMAACIWYQRYYSASARELARLVGTCQAPVIQHFSETISGSTTIRCFEQESRFNDMNMKLIDRYSQPKLYSAAAMEWLNFRMDILSTLTFAFCLVFLISFPNSMTAPGIAGLAVTYGLNLNALQANIVWFLCNLENKIISVERILQYTSLPSEAPLVITDNKPDNSWPSFGEVHIRDLQVRYAPHLPIVLRGLTCTFTAGAKTGIVGRTGSGKTTLVQILFRLIEPVAGQILIDSINISLIGIHDLRSRLSIIPQDPTMFEGTVRTNLDPLEEYTDEKIWEALDMCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTVKQHFSECTVITIAHRITSIIDSDMVLFLNQGLIEEYDSPKKLLKNKSSSLAQLVAEYTRRSNSGFGN 1502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01184 1502 CDD ABCC_MRP_domain1 626 826 - -
Cca09g01184 1502 CDD ABC_6TM_ABCC_D1 313 600 IPR044746 GO:0140359
Cca09g01184 1502 CDD ABC_6TM_ABCC_D2 937 1231 IPR044726 GO:0140359
Cca09g01184 1502 Pfam ABC transporter transmembrane region 312 579 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca09g01184 1502 Pfam ABC transporter transmembrane region 939 1181 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca09g01184 1502 Gene3D - 609 867 IPR027417 -
Cca09g01184 1502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 622 848 IPR027417 -
Cca09g01184 1502 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 939 1219 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca09g01184 1502 Pfam ABC transporter 1274 1421 IPR003439 GO:0005524
Cca09g01184 1502 Pfam ABC transporter 644 778 IPR003439 GO:0005524
Cca09g01184 1502 Gene3D - 1239 1492 IPR027417 -
Cca09g01184 1502 SMART AAA_5 653 826 IPR003593 -
Cca09g01184 1502 SMART AAA_5 1282 1467 IPR003593 -
Cca09g01184 1502 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 626 849 IPR003439 GO:0005524
Cca09g01184 1502 ProSitePatterns ABC transporters family signature. 751 765 IPR017871 GO:0005524
Cca09g01184 1502 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 202 1502 - -
Cca09g01184 1502 CDD ABCC_MRP_domain2 1254 1474 - -
Cca09g01184 1502 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 312 592 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca09g01184 1502 SUPERFAMILY ABC transporter transmembrane region 308 604 IPR036640 GO:0005524|GO:0016021
Cca09g01184 1502 Gene3D ABC transporter type 1, transmembrane domain 901 1237 IPR036640 GO:0005524|GO:0016021
Cca09g01184 1502 Gene3D ABC transporter type 1, transmembrane domain 290 608 IPR036640 GO:0005524|GO:0016021
Cca09g01184 1502 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1256 1490 IPR003439 GO:0005524
Cca09g01184 1502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1248 1482 IPR027417 -
Cca09g01184 1502 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 202 1502 - -
Cca09g01184 1502 SUPERFAMILY ABC transporter transmembrane region 937 1238 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01184 Cca-Chr9 33439768 33446171 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01184 626 865 Calmodulin-binding Proteins AT2G36910 29.658 4.55e-25 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01184 - K05666 gmx:106794105 2542.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01184 09 33439768 33446171 Cca09g01184 09 33439768 33446171 ECH