Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01183 ATGGCTAAGCTTCCCCCTCTTGAAGAGCCCCTTTTGAATGGTGACTCTAGTGTAAGCAACAATTCAGACCTCAGTAAGACTAGAGGAAATGGAAAGATAACCAGTTATTCAAAGGCTGGATATTTCAGCATTCTTACTTTCTCATGGATCAGTCCATTAATAACTCTAGGCAATGAGAAAACTTTAGACCATGAGGACCTCCCACTTCTTGCTACTGATGACAGTGCCTATGGGGTTTATCCAACTTTTAGAAGCAAACTTGAGTCAGAGTGTGGTAGTGTTAGGAATGTGACCACACTTAAGTTAGTGAAGGTGTTATTCTTGTCAACATGGCAAGGGATACTTTTATCAGGTTTTTTTGCATTCCTATACACATGTGCTTCTTATGTTGGACCCTTTTTAATTGACATTCTTGTTCAATTCCTCAATGGGAAACACGAGTTTAAAAGTGAAGGTTATGTTTTGGCTTTAGCATTTGTTGCTGCAAAGCTTGTGGAGTGTCTTTCACAAAGGCACTGGATGTTTAGGTTCCAGCAGGTTGGGGTTAGGATGCAATCAAAGTTGGTGGCAATGATCTATGCTAAAGGATTGACTCTTTCATGTCAATCGAAGGAGGTTAGCAGCACTGGGGAAATCATCAACTTAATGACTGTTGATGCCGAAAGGATTGGTGAATTTTGTTGGTACATGCATGATCCATGGATGTGTGTCTTGCAAGTTACTTTGGCCTTGTTAATTCTCTATAGAAGTGTAGGGGTTGCTTCAATAGCTGCTCTTGCCGCCACTGTTATTGTGATGTTGCTAAACCTTCCCTTGGCATCATTGCAAGGAAAGTTCCAAGGCAAGGTAATGGAGTTCAAAGATAAAAGAATGAAGGCTACATCTGAGACTCTGAACAATATGAGGATTCTAAAGCTTCAGGCATGGGAGATGAAGTTCTTATCAAAGATTATTGATCTTAGAAAAAGTGAGGAGGTATGGCTAAAGAAATTCTTAGCTGGTACAGCATTTGTTAGAATTCTCTTCCATAATGCCCCAACTTTCATTGCCGTGGTTACGTTTGGTTCTTGTGTGCTTATCGGAATCCCACTTGAATCAGGGAAGGTCTTATCTGCACTTGCAACATTCAGAATTCTTCAAATGCCCATCTACAGTCTTCCTGACACGATTTCAATGATTGCACAAACTAAGGTTTCCCTTGACAGGATTGCATCATTTCTTCGTCTGGATGAGTTGAAGACTGATGTAGTAGAGAAGCTTCCATGGGGTAGTTCTGATAAGGCAATTGAATTAGTAGATGGTAATTTCTCGTGGGATTTATCTTCCCCTAATACAACATTGAAAGACATAAATCTGACAGTTTTTCATGGTATGAGGGTTGCTGTATGTGGTACTGTTGGATCAGGCAAGTCTAGTTTACTTTCTTGTATGATAGGGGAAGTACCAAAGAAATCTGGGACCCTGAAGATATGTGGAACAAAGGCTTATGTGTCTCAATCGCCATGGATACAGAGTGGCAAGATAGAAGATAACATATTATTTGGTAAAGAGATGGAGAGGGAAAAGTATGAGAAGGTGCTAGAAGCATGTTCCTTGACAAAAGACCTTGAGGTTCTACCATTCGGTGATCAGACCATTATTGGAGAAAAGGGAATCAATTTGAGTGGTGGACAGAAGCAAAGGGTACAAATAGCCCGTGCTCTATACCAAGATGCTGATATATATCTCTTTGATGATCCCTTCAGTGCTGTGGATGCTCACACAGGATCCCATCTCTTTAAGGAGTGCTTGCTTGGCCTTTTGAAATCAAAAACTGTGATGTACGTAACTCATCAAGCAGAGTTCTTACCTGATGCTGATCTAATATTGGTCATGAGAGATGGAAGGATAACTCAATCAGGAAAATACAATGACATTCTCCAGACAGGCACTGATTTTATGGAACTTGTAGGTGCACACAAAGCAGCTTTATCTTCAATTAAGTCCTTGGAGAGAAGGCCAACATTTAAAACATCAAGCACCACCAAAGAGGACACAAATTCATTAAGTGATTTTGAACTTGAGCATAATGTGGAAAACATATATGATCAAAATGATAAGTTAGATGACACAGTTGAGGCCAAAGGACAACTTGTTCAAGAAGAAGAACGGGAAAAGGGTAGAGTTGGGTTTAAAGTATACTGGAAATACATCACAACAGCTTATGGAGGAGCTCTTGTGCCATTCATTTTACTTTCACAGACACTCACTGTGGCTTTTCAGATTGCAAGCAATTATTGGATGACTTTGGCAACTCCTGTTTCAGCAACTGATGAAACTGATATTGGAAGCTTTACACTTATGGTTGTCTATGTTGCTTTGGAAATTGGAGGTTCCATTTTCACCTTTGCCAGAGCATTTCTTGCTGTGATAGCTGGATACAAGACAGCCACTATTCTCTTCAATAAAATGCATTTGTGCATTTTTGGAGCACCAATATCATTTTTTGATGCCACCCCAAGTGGCCGAATCCTTAATAGAGCTTCAACAGACCAAAGTGCACTAGATATGAACATTTCAAATTTAGTGTGGGCAATTGCCTTCAATCTGATTCAATTCATGGGAAATATTTTTGTGATGTCTCAAGCTGCATGGCAGGTGTTTGTAGTTTTGATTCCTGTCATGGCAGCATGCATATGGTACCAGCGATACTATTCTGCATCAGCAAGGGAATTGGCTCGATTAGTTGGTACGTGCCAAGCTCCTGTTATACAACATTTTTCTGAAACAATTTCTGGATCAACAACCATAAGAAGTTTTGAGCAAGAATCAAGATTTAATGACATAAATATGAAATTGATAGACAGATATTCCCAACCCAAATTATACAGTGCTACTGCAATTGAATGGCTGAATTTCAGATTGGATATTTTATCCACTCTCACATTTGCCTTCTGTTTGGTTTTCTTGATATCTTTTCCAAATTCAGTGACTGCTCCTGGCATCGCGGGTTTGGCTGTGACATATGGACTTAATCTAAACGCTCTACAATTTAATATAATCTGGTTCCTTTGTAATTTGGAGAACAAAATTATATCCGTTGAAAGAATACTTCAGTACACAACCCTTCCTAGTGAAGCTCCTCTTGTGATAAAAGACAACAAACCGGATTATTCATGGCCATCATTTGGAGAGGTTCATATCCGGGATTTACAGGTTCGATATGCTCCTCATTTGCCTATTGTTTTAAGAGGTCTTACTTGCACTTTTTCTGCTGGAGCAAAAACTGGCATTGTGGGAAGAACAGGAAGTGGAAAAACAACTCTAGTGCAAGCACTTTTCCGACTTATTGAACCTGTTGCTGGACAAATATTGATAGACAGCATTAACATATCTTTGATTGGAATTCATGATTTGCGATCTAGACTAAGCATTATTCCTCAAGATCCTACAATGTTTGAAGGGACTGTGAGAACCAACCTGGACCCACTGGAAGAGTACACAGATGAAAAGATTTGGGAGGCTCTTGATATGTGCCAACTTGGAGATGAAGTAAGGGAAAAAGAAGGGAAGCTTGATTCTAAAGTAACTGAGAATGGAGAAAATTGGAGTATGGGTCAAAGGCAATTGGTCTGCCTTGGCCGTGTTCTACTCAAGAAAAGCAAGATCTTGGTGCTTGATGAAGCTACTGCATCGGTTGATACAGCCACAGATAATATTATTCAGCAAACTGTTAAGCAACATTTTTCAGAATGCACAGTCATTACCATTGCTCATAGGATAACTTCAATTATCGATAGTGACATGGTGCTGTTTTTAAATCAAGGGTTGATTGAGGAATATGATTCACCAAAGAAACTGCTTAAGAATAAATCCTCATCTCTAGCTCAACTAGTTGCAGAATACACAAGGAGGTCCAACTCTGGTTTTGGAAGTTAA 3918 0.3956 MAKLPPLEEPLLNGDSSVSNNSDLSKTRGNGKITSYSKAGYFSILTFSWISPLITLGNEKTLDHEDLPLLATDDSAYGVYPTFRSKLESECGSVRNVTTLKLVKVLFLSTWQGILLSGFFAFLYTCASYVGPFLIDILVQFLNGKHEFKSEGYVLALAFVAAKLVECLSQRHWMFRFQQVGVRMQSKLVAMIYAKGLTLSCQSKEVSSTGEIINLMTVDAERIGEFCWYMHDPWMCVLQVTLALLILYRSVGVASIAALAATVIVMLLNLPLASLQGKFQGKVMEFKDKRMKATSETLNNMRILKLQAWEMKFLSKIIDLRKSEEVWLKKFLAGTAFVRILFHNAPTFIAVVTFGSCVLIGIPLESGKVLSALATFRILQMPIYSLPDTISMIAQTKVSLDRIASFLRLDELKTDVVEKLPWGSSDKAIELVDGNFSWDLSSPNTTLKDINLTVFHGMRVAVCGTVGSGKSSLLSCMIGEVPKKSGTLKICGTKAYVSQSPWIQSGKIEDNILFGKEMEREKYEKVLEACSLTKDLEVLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGLLKSKTVMYVTHQAEFLPDADLILVMRDGRITQSGKYNDILQTGTDFMELVGAHKAALSSIKSLERRPTFKTSSTTKEDTNSLSDFELEHNVENIYDQNDKLDDTVEAKGQLVQEEEREKGRVGFKVYWKYITTAYGGALVPFILLSQTLTVAFQIASNYWMTLATPVSATDETDIGSFTLMVVYVALEIGGSIFTFARAFLAVIAGYKTATILFNKMHLCIFGAPISFFDATPSGRILNRASTDQSALDMNISNLVWAIAFNLIQFMGNIFVMSQAAWQVFVVLIPVMAACIWYQRYYSASARELARLVGTCQAPVIQHFSETISGSTTIRSFEQESRFNDINMKLIDRYSQPKLYSATAIEWLNFRLDILSTLTFAFCLVFLISFPNSVTAPGIAGLAVTYGLNLNALQFNIIWFLCNLENKIISVERILQYTTLPSEAPLVIKDNKPDYSWPSFGEVHIRDLQVRYAPHLPIVLRGLTCTFSAGAKTGIVGRTGSGKTTLVQALFRLIEPVAGQILIDSINISLIGIHDLRSRLSIIPQDPTMFEGTVRTNLDPLEEYTDEKIWEALDMCQLGDEVREKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTVKQHFSECTVITIAHRITSIIDSDMVLFLNQGLIEEYDSPKKLLKNKSSSLAQLVAEYTRRSNSGFGS 1305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01183 1305 CDD ABCC_MRP_domain1 429 629 - -
Cca09g01183 1305 CDD ABC_6TM_ABCC_D1 116 403 IPR044746 GO:0140359
Cca09g01183 1305 SUPERFAMILY ABC transporter transmembrane region 111 408 IPR036640 GO:0005524|GO:0016021
Cca09g01183 1305 CDD ABC_6TM_ABCC_D2 740 1034 IPR044726 GO:0140359
Cca09g01183 1305 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 115 395 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca09g01183 1305 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 6 1304 - -
Cca09g01183 1305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1049 1285 IPR027417 -
Cca09g01183 1305 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 429 652 IPR003439 GO:0005524
Cca09g01183 1305 MobiDBLite consensus disorder prediction 13 28 - -
Cca09g01183 1305 Gene3D - 411 673 IPR027417 -
Cca09g01183 1305 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 742 1022 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca09g01183 1305 MobiDBLite consensus disorder prediction 1 28 - -
Cca09g01183 1305 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1059 1293 IPR003439 GO:0005524
Cca09g01183 1305 SUPERFAMILY ABC transporter transmembrane region 740 1041 IPR036640 GO:0005524|GO:0016021
Cca09g01183 1305 Pfam ABC transporter 1076 1224 IPR003439 GO:0005524
Cca09g01183 1305 Pfam ABC transporter 447 581 IPR003439 GO:0005524
Cca09g01183 1305 Gene3D - 1042 1295 IPR027417 -
Cca09g01183 1305 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 6 1304 - -
Cca09g01183 1305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 425 651 IPR027417 -
Cca09g01183 1305 Pfam ABC transporter transmembrane region 743 984 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca09g01183 1305 Pfam ABC transporter transmembrane region 115 382 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca09g01183 1305 Coils Coil 698 718 - -
Cca09g01183 1305 Gene3D ABC transporter type 1, transmembrane domain 88 410 IPR036640 GO:0005524|GO:0016021
Cca09g01183 1305 Gene3D ABC transporter type 1, transmembrane domain 704 1040 IPR036640 GO:0005524|GO:0016021
Cca09g01183 1305 SMART AAA_5 1085 1270 IPR003593 -
Cca09g01183 1305 SMART AAA_5 456 629 IPR003593 -
Cca09g01183 1305 CDD ABCC_MRP_domain2 1057 1277 - -
Cca09g01183 1305 ProSitePatterns ABC transporters family signature. 554 568 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01183 Cca-Chr9 33403287 33410387 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01183 429 675 Calmodulin-binding Proteins AT2G36910 28.889 4.57e-25 111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01183 09 33403287 33410387 Cca09g01183 09 33403287 33410387 ECH