Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01181 ATGGACCCTGTTGATTGGGAACATGAATTGAAAAAGTACCAGGATGTTATAGCTTCAGGTACCAAGTGTATGAAAATAAAGGCCATGGTGATGCTTGCTCGTTTCTCCAAACATGCCCCTGAGCATGTGTTAGCTCGCACCATACCCTTTCTCACTGAGATTCTTGGTCACAATGTTTCAAATGATTCTGCTCCTTCTCTTCAGGAGGCTGCTGCTTATTGCTTGAAGTGCATTGCTTGCAGGGGTGATGGTGCTTTGGCGGTTGAAATCGGTGGACATGGTGCCACTCATTCTTTGATGAGGTTGTTGCCTCATTCTGATGGAAGGATGCAGAAGGTTCTGATAAAATGTTTGCTGCTTGTTGTTAGCTTTTGCAATGCTAGTAGGACAGTTGTTGCCACCAACGGTGGGGTGGAAATGATAATTGGTTTGTTGCGTTCTTGCACCGATGATACTAGGAGGTATTTGTTGGAGATCTTGAGTGTGTTGGCGTTGAGGAAGGATGTTAGGAAGGCACTCACTAGGCTGAGAGCTCTTCGCTATGTCGTGGAGGCTGCTGGTTTTGGGAGCATGGTGTTAAGGGAAAGGGCCTGTCAAGCAATTGGGTTGCTTGGAGTCACGAGGCAGGCTAGGCGTATGCTGGTTGAATTGGGAGCTATACCGGTGCTTGTGGCGTTGTTTCGCGAAGGAGATCACACGACTAAGCTTGTAGCTGGTAATTCTCTTGGTGTGATATCTTCTCATGTTGAATACATTAGGCCAGTTGCTCAAGCTGGGGCTATCCCACTTTATGCCGAGCTTCTTGAAGGACCTGATCCTTCTGGGAAGGAGATAGCTGAGGATGTGTTTTGTATATTGGCTGTTGCTGAGGACAATGCTGTGGAAATTGCTGGGCACTTGGTGAGGATTCTGAGAGAAGGTGACGACGAAGCGAAGGCTTCTGCAGCTGATGTGATGTGGGATCTGTCGGGTTACAAGCACTCGACATCTGTGATCAGGGATTCGGGTGCGATTCCTATTCTTGTTGAGCTTTTGGGGAGTGGAAGTGAGGATGTGAAGGTGAACGTTTCTGGGGCATTTGCTCAACTGAGCTATGATGGAACTGAAAGAATGGCACTTGCTGAGGCAGGGGCAATACCGATTCTCATTGACTTGATGAATGATGCTGATGGGGTTGAGGAACTAAGGGATAACGCCGCAGAGGCCCTTGTCAATTTTCATGAAGATCCGTTGTATCATGGTAGAGTGTCTGATGCGATTAATGTTCCTTCGTTCAGAAATATACAGAATAGATTAGTTCATATTCGTGCATCGAATGAGCATATGGCTAGATCCTTGAGAATAATAAGCGTTGAGCAGCTCACTTGGAACCCGGATCTTGTATAA 1386 0.4675 MDPVDWEHELKKYQDVIASGTKCMKIKAMVMLARFSKHAPEHVLARTIPFLTEILGHNVSNDSAPSLQEAAAYCLKCIACRGDGALAVEIGGHGATHSLMRLLPHSDGRMQKVLIKCLLLVVSFCNASRTVVATNGGVEMIIGLLRSCTDDTRRYLLEILSVLALRKDVRKALTRLRALRYVVEAAGFGSMVLRERACQAIGLLGVTRQARRMLVELGAIPVLVALFREGDHTTKLVAGNSLGVISSHVEYIRPVAQAGAIPLYAELLEGPDPSGKEIAEDVFCILAVAEDNAVEIAGHLVRILREGDDEAKASAADVMWDLSGYKHSTSVIRDSGAIPILVELLGSGSEDVKVNVSGAFAQLSYDGTERMALAEAGAIPILIDLMNDADGVEELRDNAAEALVNFHEDPLYHGRVSDAINVPSFRNIQNRLVHIRASNEHMARSLRIISVEQLTWNPDLV 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01181 461 SMART arm_5 325 365 IPR000225 GO:0005515
Cca09g01181 461 SMART arm_5 35 80 IPR000225 GO:0005515
Cca09g01181 461 SMART arm_5 125 165 IPR000225 GO:0005515
Cca09g01181 461 SMART arm_5 207 247 IPR000225 GO:0005515
Cca09g01181 461 SMART arm_5 366 408 IPR000225 GO:0005515
Cca09g01181 461 SMART arm_5 248 288 IPR000225 GO:0005515
Cca09g01181 461 SMART arm_5 166 206 IPR000225 GO:0005515
Cca09g01181 461 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 377 406 IPR000225 GO:0005515
Cca09g01181 461 PANTHER U BOX DOMAIN-CONTAINING 3 460 - -
Cca09g01181 461 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 10-LIKE 3 460 - -
Cca09g01181 461 Pfam Armadillo/beta-catenin-like repeat 329 364 IPR000225 GO:0005515
Cca09g01181 461 Pfam Armadillo/beta-catenin-like repeat 370 405 IPR000225 GO:0005515
Cca09g01181 461 Gene3D - 249 421 IPR011989 -
Cca09g01181 461 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 336 378 IPR000225 GO:0005515
Cca09g01181 461 SUPERFAMILY ARM repeat 17 403 IPR016024 -
Cca09g01181 461 Gene3D - 7 248 IPR011989 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01181 138 414 U-box Gene Family AT2G23140 27.465 1.15e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01181 - - gmx:100819735 824.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01181 09 33369680 33371691 Cca09g01181 09 33369680 33371691 ECH