Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01179 ATGAGAGATGGAAGGATAACTCAATCAGGAAAATACAATGACATTCTCCAGACAGGCACTGATTTTATGGAACTTGTAGGTGCACACAAAGCAGCTTTATCTTCAATTAAGTCCTTGGAGAGAAGACCAACATTTAAAAAATCAAGTACCACCAAAGAAGACACAAATTCATTAAGTGATTTTGAACTTGAGCATAATGTGGAAAACATATATGATCAAAATGATAAGTTAGATGACATGGTTGAGGTCAAAGGACAACTTGTTCAAGAAGAAGAACGGGAAAAGGGTAGAGTTGGGTTTAAAGTATACTGGAAATACATCATAACAGCCTATGGAGGAGCTCTTGTACCCTTCATATTACTTTCACAAACGCTCACTGTGGGGTTTCAGGTTGCAAGCAATTATTGGATGACTGTGGCAACTCCTGTTTCAGCAACTGCAGAACCTGACGTTGGAAGCTTTACACTTATGACCATTATTGGAGAAAAGGGAATCAATTTGAGTGGTGGACAGAAGCAAAGGGTACAAATAGCCCGTGCTCTATACCAAGATGCTGATATATATCTCTTTGATGATCCCTTCAGTGCTGTGGATGCTCATACAGGATCCCATCTCTTTAAGGAGGGCTTGCTTGGCCTTTTGAAATCAAAAACTGTGATATACATTACTCATCAAGTAGAGTTCTTACCTGATGCTGATCTAATATTGGTCATGAGAGATGGAAGGATAACTCAATCAGGAAAATACAATGACATTCTCCAGACAGGCACTGATTTTATGGAACTTGTAGGTGCACACAAAGCAGCTTTATCTTCAATTAAGTCCTTGGAGAGAAGACCAACATTTAAAATATCAAGCACCACCAAAGAGGACACAAATTCATTAAGTGATTTTGAACTTGAGCATAATGTGGAAAACATATATGATCAAAATGATAAGTTAGATGACATGGTTGAGGTCAAAGGACAACTTGTTCAAGAAGAAGAACGGGAAAAGGGTAGAGTTGGGTTTAAAGTATACTGGAAATACATCATAACAGCCTATGGAGGAGCTCTTGTACCCTTCATATTACTTTCACAAACGCTCACTGTGGGGTTTCAGGTTGCAAGCAATTATTGGATGACTGTGGCAACTCCTGTTTCAGCAACTGCAGAACCTGACGTTGGAAGCTTTACACTTATGGTTGTCTATGTTGCTTTGGCAATTGGAAGCTCCATTTTCACCTTTGCCAGAGCATTTCTTTCTGTGGTAGGAGTAAATGATGTTAACATATCAAGAACATAG 1284 0.3894 MRDGRITQSGKYNDILQTGTDFMELVGAHKAALSSIKSLERRPTFKKSSTTKEDTNSLSDFELEHNVENIYDQNDKLDDMVEVKGQLVQEEEREKGRVGFKVYWKYIITAYGGALVPFILLSQTLTVGFQVASNYWMTVATPVSATAEPDVGSFTLMTIIGEKGINLSGGQKQRVQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEGLLGLLKSKTVIYITHQVEFLPDADLILVMRDGRITQSGKYNDILQTGTDFMELVGAHKAALSSIKSLERRPTFKISSTTKEDTNSLSDFELEHNVENIYDQNDKLDDMVEVKGQLVQEEEREKGRVGFKVYWKYIITAYGGALVPFILLSQTLTVGFQVASNYWMTVATPVSATAEPDVGSFTLMVVYVALAIGSSIFTFARAFLSVVGVNDVNISRT 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01179 427 Pfam ABC transporter 155 194 IPR003439 GO:0005524
Cca09g01179 427 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 158 - -
Cca09g01179 427 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 158 417 - -
Cca09g01179 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 264 IPR027417 -
Cca09g01179 427 Gene3D ABC transporter type 1, transmembrane domain 317 425 IPR036640 GO:0005524|GO:0016021
Cca09g01179 427 ProSitePatterns ABC transporters family signature. 167 181 IPR017871 GO:0005524
Cca09g01179 427 Gene3D - 122 284 IPR027417 -
Cca09g01179 427 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 10 265 IPR003439 GO:0005524
Cca09g01179 427 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 1 158 - -
Cca09g01179 427 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 158 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01179 Cca-Chr9 33349708 33351607 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01179 158 281 Calmodulin-binding Proteins AT2G36910 32.308 8.23e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01179 - K05666 ccaj:109789105 788.489