Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01178 ATGCAAACATCTCAGAATCATAAATTTTCTTATGGCTCAGGCGGGTTCTATGTTGAGCCTGTGCAAAATTTGGAGTCATATTGCGTACCATCAAGTGAGAACTTAGACAATTACTGTTCCTCTGATAACAGCAGCCAAACCACCTACCCCTCTGTCCAAACCTTAGAACAATATTGCACCCTTGAATCTGCTTCCACAAGCAACAGTTTCCCTTGCCAAAATTCTCCATCTGCTCCCAGTTTCTCATCCAACAACAGTCCAGTGTCGAAGTCATATGTGTTAAGGCCACAACATTCTCTTGAAATTGTTAACGGCTCACCCGAGGATGATTCGTACCTGACACATGACCTCGACGACCTGACGCATAAAATAAGAGAGCTGGAAACTGCTATGCTGGGACCTAATGCAAATATGCTTGACATCTATGATGCTGTAATTCCAGAAGAGCCTGATTCATTGTTGTTAGAGGCAGAGAAGTGGAAGAAATTGATGGAGATGGCATCTAGAGGGGATTTGAAAGAGATGCTTTATACTTGTGCAAGAGCAATGGCTGTGAATGATATGGAGACAACTGAATGGCTGATGTCAGAGTTGCGTAAGATGGTGTCCATTTCGGGCAACCCGATGCAACGGTTGGGAGCATACATGTTGGAGTCTCTTGTGGCAAGGATGTCTGCTTCAGGAAGCACAATCTACAAATCCTTGAAATGCAGTGAGCCTACTGGTAATGAACTACTTTCATACATGCATGTACTATATGAAATTTGTCCATACTTCAAGTTTGGGTACATGTCAGCAAATGGAGCAATTGCTGAAGCTCTGAAGGAGGAAAATGAAGTCCACATAATTGACTTTCAGATTAGCCAAGGAACTCAATGGGTGAGCCTAATTCAGGCTCTTGCTCGGCGGCCTGGAGGGCCGCCAAAGATCAGAATATCAGGAGTGGATGACTCCTTTTCCTCTTATGCCAGAGGAGGAGGGCTTGATATTGTTGGGAAAAGGTTATCAGCGCTTGCAGAGTCATGTCATGTACCCTTTGAGTTCAATGCTGTGAGAGTACCTGCCTCTCAGGTGCAACTTGAAGACCTTGAACTTCGCCCTTATGAAGCTTTGGCTGTGAATTTTTCCATAATGCTGCATCATGTGCCAGATGAGAGTGTGAACAGTCACAATCATCGCGATCGGTTGCTGAGACTGGCAAAGCACCTGTCTCCCAAGGTGGTGACTCTGGTTGAGCAAGAATTCAACACCAACAACACACCATTCTTGCAGCGTTTCGTTGAGACGATGAACTACTACCTGGCCATTTTTGAATCAGTTGATGCTGTTCTTCCAAGGGAGCACAAAGAGAGGATCAATGTGGAGCAGCACTGCTTGGCACGTGAAGTAGTCAACTTGATAGCATGTGAGGGAGAAGAAAGAGTTGAACGCCATGAGCTACTGAATAAGTGGAGAAAGCGTTTCACAATGGCTGGGTTTACACCTTATCCATTGAGCTCCGTTATTAATTCTTCAATCAAGGATCTTCTGCAGAGCTATCATGGACACTACACTCTGGAAGAGAGAGATGGTGCACTATTTCTTGGTTGGATGAATCAAGTTCTTATTGCCTCTTGTGCTTGGAGATGA 1629 0.4469 MQTSQNHKFSYGSGGFYVEPVQNLESYCVPSSENLDNYCSSDNSSQTTYPSVQTLEQYCTLESASTSNSFPCQNSPSAPSFSSNNSPVSKSYVLRPQHSLEIVNGSPEDDSYLTHDLDDLTHKIRELETAMLGPNANMLDIYDAVIPEEPDSLLLEAEKWKKLMEMASRGDLKEMLYTCARAMAVNDMETTEWLMSELRKMVSISGNPMQRLGAYMLESLVARMSASGSTIYKSLKCSEPTGNELLSYMHVLYEICPYFKFGYMSANGAIAEALKEENEVHIIDFQISQGTQWVSLIQALARRPGGPPKIRISGVDDSFSSYARGGGLDIVGKRLSALAESCHVPFEFNAVRVPASQVQLEDLELRPYEALAVNFSIMLHHVPDESVNSHNHRDRLLRLAKHLSPKVVTLVEQEFNTNNTPFLQRFVETMNYYLAIFESVDAVLPREHKERINVEQHCLAREVVNLIACEGEERVERHELLNKWRKRFTMAGFTPYPLSSVINSSIKDLLQSYHGHYTLEERDGALFLGWMNQVLIASCAWR 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01178 542 ProSiteProfiles GRAS family profile. 163 542 IPR005202 -
Cca09g01178 542 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 17 541 IPR005202 -
Cca09g01178 542 MobiDBLite consensus disorder prediction 69 89 - -
Cca09g01178 542 Pfam GRAS domain family 172 542 IPR005202 -
Cca09g01178 542 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 17 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01178 Cca-Chr9 33314427 33318048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01178 1 542 GRAS Transcription Factor Family AT1G50600 56.443 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca09g01178 GRAS 5.8e-132 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01178 - - gmx:100785400 983.786
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01178 09 33314427 33318048 Cca09g01178 09 33314427 33318048 ECH
Cca09g01178 09 33314427 33318048 Cca05g02000 05 39882374 39885904 PCT