Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01177 ATGGACGCCGGCGAAGCCCTCTCCGACGATCCGAATGGGTCCAGGCCCAATTCCGCCGCCGACGGAGCTCCGGCCACCGGCGGGGCGAGGTACAAGCTCATGTCGCCGGCCAAGCTCCCGATCTCGCGGTCGCCGTGCGTCACGATTCCGCCGGGGCTCAGTCCGACGTCGTTTCTGGAGTCGCCGGTGCTGCTCTCCAACATGAAGGTGGAACCTTCACCGACTACAGGATCCCTTTCTATGCTTCATCAAACTGCACATGGTTCCGTGACTTCTGCTGCATCTGCTACATTTCCTGTAACCACTGCATGCTTCAATAGCAATACTGTTGATGACAGAAAACCCAGCTTCTTTGAGTTTAAACCACACAGTAGATCAAATATGGTTCCTGCAGACTCTGACAACCATGCAAGTGAAAAATCTACTCAAATAGATGGTCAAGGAAAAACTCAAGCTTTTGACTCATCACCATTTGTAAAAAATGAGATAGCAGACCCTTCAAATGAATTAAGTCTATCATCACCAGTTCAAATGGTTAGCTCAGGAGCTGGTGCACGTGTTGAAGGTGATTTGGATGAATTGAACCCTAGGAGCAACATAGCAACTGGGCTTCAAGCATCACAAGTTGACAATAGGGGTAGTGGACTTTCAGCTGCAGCTGATAGAGTATCTGATGATGGATATAACTGGAGAAAATATGGGCAAAAACATGTTAAAGGAAGTGAATTTCCACGCAGTTATTACAAATGTACTCATCCTAACTGTGAAGTTAAGAAACTATTTGAACGCTCTCACGATGGGCAAATCACCGAAATCATTTATAAGGGGACACATGATCATCCTAAACCTCAACCTAACCGCCGTTACTCTTCTGGAACTATGATGTCTATGCAAGAAGAGAGATCTGAGAAAGCTTTGACTGGCCGAGATGACAAAGGATCCAATATATGTGGCCAGATGTCTCACCCAGCTGATCCTGACAGTACTCCAGAGCTATCCCCTGTAGCAACAAATGATGGTGATCTAGAGGGTACAGGGTTTTTGTCAAACCGGAATACtgatgaggttgatgatgatgatCCCTTCTCAAAGCGAAGAAAAATGGACCTTGGAAATGCTGACATCACTCCTGTGGTTAAGCCTATCCGGGAGCCACGGGTTGTTGTGCAAACACTAAGTGAGGTTGATATATTGGATGATGGTTACCGCTGGCGCAAGTATGGGCAGAAGGTGGTGAGAGGCAATCCTAACCCTAGTCAACTTGGTCTCACTCTCCCAACGCCAAATTACCCTTTTGCCCTTCGCTCTTTGCCTTCTTTTCCTTTGACTCGGCCCTCTCTCTACGCCGCAATGGACGCCGGCGAAGCCCTCTCCGACGATCCGAATGGGTCCAGGCCCAATTCCGCCGCCGACGGAGCTCCGGCCACCGGCGGGGCGAGGTACAAGCTCATGTCGCCGGCCAAGCTCCCGATCTCGCGGTCGCCGTGCGTCACGATTCCGCCGGGGCTCAGTCCGACGTCGTTTCTGGAGTCGCCGGTGCTGCTCTCCAACATGAAGGTGGAACCTTCACCGACTACAGGATCCCTTTCTATGCTTCATCAAACTGCACATGGTTCCGTGACTTCTGCTGCATCTGCTACATTTCCTGTAACCACTGCATGCTTCAATAGCAATACTGTTGATGACAGAAAACCCAGCTTCTTTGAGTTTAAACCACACAGTAGATCAAATATGGTTCCTGCAGACTCTGACAACCATGCAAGTGAAAAATCTACTCAAATAGATGGTCAAGGAAAAACTCAAGCTTTTGACTCATCACCATTTGTAAAAAATGAGATAGCAGACCCTTCAAATGAATTAAGTCTATCATCACCAGTTCAAATGGTTAGCTCAGGAGCTGGTGCACGTGTTGAAGGTGATTTGGATGAATTGAACCCTAGGAGCAACATAGCAACTGGGCTTCAAGCATCACAAGTTGACAATAGGGGTAGTGGACTTTCAGCTGCAGCTGATAGAGTATCTGATGATGGATATAACTGGAGAAAATATGGGCAAAAACATGTTAAAGGAAGTGAATTTCCACGCAGTTATTACAAATGTACTCATCCTAACTGTGAAGTTAAGAAACTATTTGAACGCTCTCACGATGGGCAAATCACCGAAATCATTTATAAGGGGACACATGATCATCCTAAACCTCAACCTAACCGCCGTTACTCTTCTGGAACTATGATGTCTATGCAAGAAGAGAGATCTGAGAAAGCTTTGACTGGCCGAGATGACAAAGGATCCAATATATGTGGCCAGATGTCTCACCCAGCTGATCCTGACAGTACTCCAGAGCTATCCCCTGTAGCAACAAATGATGGTGATCTAGAGGGTACAGGGTTTTTGTCAAACCGGAATACtgatgaggttgatgatgatgatCCCTTCTCAAAGCGAAGAAAAATGGACCTTGGAAATGCTGACATCACTCCTGTGGTTAAGCCTATCCGGGAGCCACGGGTTGTTGTGCAAACACTAAGTGAGGTTGATATATTGGATGATGGTTACCGCTGGCGCAAGTATGGGCAGAAGGTGGTGAGAGGCAATCCTAACCCTAGGAGTTATTACAAATGCACGAACTCAGGTTGCCCCGTCAGAAAACATGTGGAGAGGGCATCTCATGATCCAAAAGCTGTAATTACCACATATGAGGGGAAACACAATCATGATGTACCAACTGCAAGGAATAGTTGCCATGACATGGCAAGACCAGCAAGTGCAGGTGGACAGACAAGAACCAGGCCAGAAGAAAGTGATACCATCAGCCTTGACCTTGGGATGGGAATCAGTCCAACTGCAGAAAACACATCAAACAACCAAGGCAGAATGATGCTTTCTGAATTTGGGGGCAACCAAACTCACCCCAGCAATTCCAATTTCAAGTTTGTTCATACTACTACGGCGCCGGCATACTTTGGTGTTCTAAGTAACAACTCTAATCCATATGGTTCTAGAGAAAATACAAGTGATAGTCCATCTTTAAACCATTCTGCTTATCCTTGCCCGCAGAACATGGGGAGAATACTAATGGGTCCTTAA 3087 0.4642 MDAGEALSDDPNGSRPNSAADGAPATGGARYKLMSPAKLPISRSPCVTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLSMLHQTAHGSVTSAASATFPVTTACFNSNTVDDRKPSFFEFKPHSRSNMVPADSDNHASEKSTQIDGQGKTQAFDSSPFVKNEIADPSNELSLSSPVQMVSSGAGARVEGDLDELNPRSNIATGLQASQVDNRGSGLSAAADRVSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPNRRYSSGTMMSMQEERSEKALTGRDDKGSNICGQMSHPADPDSTPELSPVATNDGDLEGTGFLSNRNTDEVDDDDPFSKRRKMDLGNADITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPSQLGLTLPTPNYPFALRSLPSFPLTRPSLYAAMDAGEALSDDPNGSRPNSAADGAPATGGARYKLMSPAKLPISRSPCVTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLSMLHQTAHGSVTSAASATFPVTTACFNSNTVDDRKPSFFEFKPHSRSNMVPADSDNHASEKSTQIDGQGKTQAFDSSPFVKNEIADPSNELSLSSPVQMVSSGAGARVEGDLDELNPRSNIATGLQASQVDNRGSGLSAAADRVSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPNRRYSSGTMMSMQEERSEKALTGRDDKGSNICGQMSHPADPDSTPELSPVATNDGDLEGTGFLSNRNTDEVDDDDPFSKRRKMDLGNADITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNSGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARNSCHDMARPASAGGQTRTRPEESDTISLDLGMGISPTAENTSNNQGRMMLSEFGGNQTHPSNSNFKFVHTTTAPAYFGVLSNNSNPYGSRENTSDSPSLNHSAYPCPQNMGRILMGP 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01177 1028 SUPERFAMILY WRKY DNA-binding domain 222 283 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca09g01177 1028 ProSiteProfiles WRKY domain profile. 843 908 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g01177 1028 MobiDBLite consensus disorder prediction 997 1028 - -
Cca09g01177 1028 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 466 1008 - -
Cca09g01177 1028 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 16 419 - -
Cca09g01177 1028 Gene3D WRKY domain 666 734 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca09g01177 1028 Gene3D WRKY domain 216 284 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca09g01177 1028 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 16 419 IPR044810 GO:0003700
Cca09g01177 1028 MobiDBLite consensus disorder prediction 273 367 - -
Cca09g01177 1028 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 466 1008 IPR044810 GO:0003700
Cca09g01177 1028 MobiDBLite consensus disorder prediction 723 817 - -
Cca09g01177 1028 Gene3D WRKY domain 835 901 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca09g01177 1028 Gene3D WRKY domain 385 424 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca09g01177 1028 SUPERFAMILY WRKY DNA-binding domain 840 908 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca09g01177 1028 ProSiteProfiles WRKY domain profile. 393 418 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g01177 1028 MobiDBLite consensus disorder prediction 578 604 - -
Cca09g01177 1028 MobiDBLite consensus disorder prediction 904 932 - -
Cca09g01177 1028 MobiDBLite consensus disorder prediction 286 300 - -
Cca09g01177 1028 SUPERFAMILY WRKY DNA-binding domain 390 418 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca09g01177 1028 ProSiteProfiles WRKY domain profile. 669 733 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g01177 1028 MobiDBLite consensus disorder prediction 802 817 - -
Cca09g01177 1028 MobiDBLite consensus disorder prediction 128 154 - -
Cca09g01177 1028 MobiDBLite consensus disorder prediction 571 604 - -
Cca09g01177 1028 ProSiteProfiles WRKY domain profile. 219 283 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g01177 1028 SUPERFAMILY WRKY DNA-binding domain 672 733 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca09g01177 1028 MobiDBLite consensus disorder prediction 736 750 - -
Cca09g01177 1028 MobiDBLite consensus disorder prediction 352 367 - -
Cca09g01177 1028 Pfam WRKY DNA -binding domain 399 419 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g01177 1028 Pfam WRKY DNA -binding domain 225 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g01177 1028 Pfam WRKY DNA -binding domain 849 905 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g01177 1028 Pfam WRKY DNA -binding domain 675 731 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g01177 1028 MobiDBLite consensus disorder prediction 455 478 - -
Cca09g01177 1028 SMART WRKY_cls 674 732 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g01177 1028 SMART WRKY_cls 224 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g01177 1028 SMART WRKY_cls 848 907 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g01177 1028 SMART WRKY_cls 398 467 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g01177 1028 MobiDBLite consensus disorder prediction 121 154 - -
Cca09g01177 1028 MobiDBLite consensus disorder prediction 1 29 - -
Cca09g01177 1028 MobiDBLite consensus disorder prediction 997 1016 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01177 Cca-Chr9 33300258 33312045 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01177 34 418 WRKY Transcription Factor Family AT4G26640 59.126 2.32e-124 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca09g01177 WRKY 2.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01177 - - gmx:100781491 1068.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01177 09 33300258 33312045 Cca09g01177 09 33300258 33312045 ECH
Cca09g01177 09 33300258 33312045 Cca05g01998 05 39872877 39878568 PCT