Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01175 ATGATGCCTTGTGCTAAGCCTGATGCGTCTGAGAAAGACTCAGAGCCATTTGTTGAGAAGGATCCAACTGGAAGATATGGCAGATACAGTGAATTACTAGGATCTGGAGCTGTGAAAAAAGTGTACAGGGCATTTGATCAAGAAGAGGGAATAGAGGTGGCTTGGAACCAAGTGAAACTGTGGAACTTCAGTGATGACCCTGCCATGGTGGATAGGCTCTATTCTGAGGTGAGATTGCTGAGAAGCTTGAAAAACAAAAACATAATCTCCCTCTACAGTGTTTGGAGGGATGAGAAGCACAACACATTGAATTTCATCACTGAGGTCTGCACCAGTGGGAACCTGAGGGAGTACAGGAAGAAGCACAGGCATGTGTCAATGAAGGCCTTGAAGAAGTGGTCCAAGCAGATTTTGGAAGGGCTGAATTACTTGCATGAGCATGACCCTTGTATCATCCACAGAGACCTCAACTGCAGTAATGTGTTTGTCAATGGGAATACTGGCCAGGTTAAGATTGGTGACTTGGGTTTGGCTGCAATTGTGGAGAAGAATCATTCTGCACATTCAATTCTTGGGACACCCGAATTTATGGCACCTGAGTTATATGATGAGCACTACACTGAACTGGTTGACATATACTCATTTGGAATGTGTGTGTTAGAGATGGTGACACTGGAGATTCCTTATAGTGAGTGTGACAATGTTGTCAAAATATACAAGAAGGTGTCATCAGGTGTGAGACCTCAGGCCTTGAACAACATCAAAGATAGTGAGGTGAAGGCCTTCATTGAGAGGTGTCTTGCTCAGCCAAGTGCTAGACCTTCTGCTGCTGAACTGCTCAAAGACCCTTTCTTTGATGTAACTGATTATGATGAAAATGGGGATTCTGCTGCTTTATGA 900 0.4411 MMPCAKPDASEKDSEPFVEKDPTGRYGRYSELLGSGAVKKVYRAFDQEEGIEVAWNQVKLWNFSDDPAMVDRLYSEVRLLRSLKNKNIISLYSVWRDEKHNTLNFITEVCTSGNLREYRKKHRHVSMKALKKWSKQILEGLNYLHEHDPCIIHRDLNCSNVFVNGNTGQVKIGDLGLAAIVEKNHSAHSILGTPEFMAPELYDEHYTELVDIYSFGMCVLEMVTLEIPYSECDNVVKIYKKVSSGVRPQALNNIKDSEVKAFIERCLAQPSARPSAAELLKDPFFDVTDYDENGDSAAL 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01175 299 PIRSF TyrPK_CSF1-R 113 281 - -
Cca09g01175 299 PIRSF TyrPK_CSF1-R 27 129 - -
Cca09g01175 299 Gene3D Transferase(Phosphotransferase) domain 1 110 290 - -
Cca09g01175 299 PANTHER SERINE/THREONINE-KINASE WNK11-LIKE PROTEIN 2 295 - -
Cca09g01175 299 Gene3D Phosphorylase Kinase; domain 1 10 108 - -
Cca09g01175 299 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01175 299 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 2 295 - -
Cca09g01175 299 CDD STKc_WNK 25 285 - -
Cca09g01175 299 MobiDBLite consensus disorder prediction 1 23 - -
Cca09g01175 299 MobiDBLite consensus disorder prediction 8 23 - -
Cca09g01175 299 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01175 299 SUPERFAMILY Protein kinase-like (PK-like) 23 286 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01175 Cca-Chr9 33253609 33255634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01175 1 286 MAP Kinase Kinase Kinase AT5G55560 81.379 0.0 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Cca09g01175 Pkinase 2.1e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01175 K08867 - gmx:100782039 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01175 09 33253609 33255634 Cca09g01175 09 33253609 33255634 ECH
Cca09g01175 09 33253609 33255634 Cca05g01996 05 39856010 39858322 PCT