Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01167 ATGGCAGAAACTGCAGTGTCCTTGGCTCGTGAGCATTTGCTTCCAAAAATTGTGGAAGCTGTGAAAATGCTTAGAGATCTCCCAAAAGAAGTTGCAGACATTACAGAAGAACTGGAGAGCTTTCAAGATTTCATAAATGATGCAGATCAAGTGGCTGAAGCTGAAGAAGATGATGGTAGGCGTGATAGAATCAAAAAAAGGGTGATGCGGTTGAGAGAAGCAGCTTTCCGCATAGAAGATATCATCGACAAATTCTCGATTCATGACGAAAACAATCCTCACGATCCTCGATGTGCAGCTTTACTCTGTGAGGCTGTTGAGTTCATCAAAACTCGGATCCTTCAACTTCAAGTAGCATATAAGATTCAGGATGTGAAATCACTTGTTTGTGCTGAAAGAGATGGCTTCCAAAAGCAATTTCCTTTACCAACAAAACCGAGTGGTTCTAGAGGAAATCAGAATGTCACATGGCACAAGCTTCGAATGGATCCTCTATTTATTGAGCAAGATGAGGTTGTGGGCTTTGAGAGTCCAAGACGTACGTTGAACAATTGGTTGATAGAGGGACGAGAAGAGCGCACTGTCATCTCTGTTGTTGGTTTGGCAGGAGTTGGAAAAACCACTCTTGCTAAGCAAGTTTTTGACAATGTCCATAACCACTTCGAGTGCCATGCATTGATCACAGTGTCTCAATCCTACACTGTAGAAGGACTCCTCAGGGATATGTTGCACCAGTTTTGTAAAGAAAAGATGGAGAATCATCCTGCAGATGTTTCTACCATGGATCGAAGATCGTTGATTGAAGAAGTCAGAAAGCAGTTGCGCAACAAGAGGTATGTTGTCATGTTTGATGACGTGTGGAATGAAAAATTTTGGGATGATGTTGAATCTGCTGTAATTGATAATAAAAATAAAAGTAGAATATTAATTACAACCAGATATGAGAAGGTTGCAGACTTCTGTAAGAAATCTTCTTTTATTGAAGTGCATAAGCTAGAAGAACCTTTAAGTGAAGAAGAATGTTTCAGATTGTTCTGTAACAAGGCATTTAAGTATGGTTCTGATGGACGTTGTCCAGAAGAACTTAAAGATATTACTCTTGAAATTGTTAGAAAGTGTAAAGGTTTACTTCTAGCAATTGTGGCCATTGGTGGTCTTTTATCTCAGAAAGATTTTTGTGCACATGAACGGATATTGTTTAGTCAAAATCTAAGTTTAGAGTTGGAGAGGAATTCTGAGTTAAACAGTATAAAAAAGATTTGA 1263 0.3895 MAETAVSLAREHLLPKIVEAVKMLRDLPKEVADITEELESFQDFINDADQVAEAEEDDGRRDRIKKRVMRLREAAFRIEDIIDKFSIHDENNPHDPRCAALLCEAVEFIKTRILQLQVAYKIQDVKSLVCAERDGFQKQFPLPTKPSGSRGNQNVTWHKLRMDPLFIEQDEVVGFESPRRTLNNWLIEGREERTVISVVGLAGVGKTTLAKQVFDNVHNHFECHALITVSQSYTVEGLLRDMLHQFCKEKMENHPADVSTMDRRSLIEEVRKQLRNKRYVVMFDDVWNEKFWDDVESAVIDNKNKSRILITTRYEKVADFCKKSSFIEVHKLEEPLSEEECFRLFCNKAFKYGSDGRCPEELKDITLEIVRKCKGLLLAIVAIGGLLSQKDFCAHERILFSQNLSLELERNSELNSIKKI 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01167 420 Pfam NB-ARC domain 181 417 IPR002182 GO:0043531
Cca09g01167 420 Gene3D - 160 329 IPR027417 -
Cca09g01167 420 Gene3D - 4 124 - -
Cca09g01167 420 PANTHER DISEASE RESISTANCE PROTEIN RP 27 417 IPR044974 GO:0006952
Cca09g01167 420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 402 IPR027417 -
Cca09g01167 420 CDD RX-CC_like 2 127 IPR038005 -
Cca09g01167 420 Pfam Rx N-terminal domain 5 94 IPR041118 -
Cca09g01167 420 PANTHER - 27 417 - -
Cca09g01167 420 Gene3D - 335 420 IPR042197 -
Cca09g01167 420 PRINTS Disease resistance protein signature 195 210 - -
Cca09g01167 420 PRINTS Disease resistance protein signature 273 287 - -
Cca09g01167 420 PRINTS Disease resistance protein signature 373 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01167 Cca-Chr9 33096354 33097616 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01167 196 384 WRKY Transcription Factor Family AT5G45050 27.368 2.80e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01167 K13457 - ccaj:109796490 817.764