Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01166 ATGGCAGAAACTGCACCGTCCTTGGCCGGTCAGTATTTGCTTCCTAAGATTTTGGAAGCTTTGAAAATGCTTAGAGATCTCCCAAAAGAAGTTGCAAACATTACAGAAGAACTTGAGAGCTTTCAAGATTTCATAAATGATGCAGATCAAGTGGCTGAAGCTGAAGAAGATGATGGTAGGCGTGATAGAATCAAAAAAAGGGTGATGCGGTTGAGAGAAGCAGCTTTCCGCATGGAAGATATCATCGACGAATTCTCGATTCATGAGGAAAACAATCCTCACGATCCTCGATGTGAAGCTTTACTCTGTGAGGCTGTTGAGTTCATCAAAACTCGGATCCTTCAACTTCAAATAGCATATAAGATTCAGGATGTGAAATCACTTGTTTGTGCTGAAAGAGATGGCTTCCAAAAGCAATTTCCTTTACCAACAAAACCGAGTGGTTCTAGAGGAAATCAGAATGTCACATGGCACAAGCTTCGAATGGATCCTCTCTTTATTGAGCAAGATGAGGTTGTGGGCTTTGAGAGTCCAAGACGTACATTGAAGAATTGGTTGATAGAGGGACGAGAAGAGCGCACTGTCATCTCTGTTGTTGGTTTGGCAGGAGTTGGAAAAACCACTCTTGCTAAGCAAGTTTTTGACAATGTCCATAACAACTTCGAGTGCCATGCATTGATCACAGTGTCTCAATCCTACACTGTAGAAGGACTGCTGAGGGATATGTTGCACCAGCTTTGTAAAGAAAACATGGAGAATCTTCCTGCAGATGTTTCTACCATGGATCGACGATCGTTGCTTGAAGAAGTCAGAAAGCAGTTGCACAACAAGAGGTATGTTGTCATGTTTGATGACGTGTGGAATGAAAAATTTTGGGATGATGTTGAATATGCTGTAATTGATGATAAAAATAAAAGTAGAATATTAATAACATCCAGAGATGAGAAGGTTGCAGACTTCTGTAAGAGATCTTCTTTTACTGAAGTGCATAAGCTAGAAGAACCTTTAAGTGAAGAAGAATGTTTTAGATTGTTCTGTAACAAGGCATTTAAGTATGGTTCTGATGGACGTTGTCCAGAAGAACTTAAAGATATATCTCTTGAAATTGTTAGGAAGTGTAAAGGTTTACCTCTAGCAATCGTGGCCATCGGTGGTCTTTTATCTCAGAAAGATTTTTGTGCAGATGAATGGGTACTCCGAGTTGGTGCAGAAATTTTGGAAGAACTCTACAAAACAGCATTTGAAACCATGAAGCGTCCAACTTTCGAAATAAAAGAAATTTCTAAATTTTTCACCCAGCGCTTGGACCCAGAGCTAAGCGCCAAGATGAATTCCTAA 1338 0.4006 MAETAPSLAGQYLLPKILEALKMLRDLPKEVANITEELESFQDFINDADQVAEAEEDDGRRDRIKKRVMRLREAAFRMEDIIDEFSIHEENNPHDPRCEALLCEAVEFIKTRILQLQIAYKIQDVKSLVCAERDGFQKQFPLPTKPSGSRGNQNVTWHKLRMDPLFIEQDEVVGFESPRRTLKNWLIEGREERTVISVVGLAGVGKTTLAKQVFDNVHNNFECHALITVSQSYTVEGLLRDMLHQLCKENMENLPADVSTMDRRSLLEEVRKQLHNKRYVVMFDDVWNEKFWDDVEYAVIDDKNKSRILITSRDEKVADFCKRSSFTEVHKLEEPLSEEECFRLFCNKAFKYGSDGRCPEELKDISLEIVRKCKGLPLAIVAIGGLLSQKDFCADEWVLRVGAEILEELYKTAFETMKRPTFEIKEISKFFTQRLDPELSAKMNS 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01166 445 PRINTS Disease resistance protein signature 273 287 - -
Cca09g01166 445 PRINTS Disease resistance protein signature 373 387 - -
Cca09g01166 445 PRINTS Disease resistance protein signature 195 210 - -
Cca09g01166 445 CDD RX-CC_like 13 127 IPR038005 -
Cca09g01166 445 Pfam Rx N-terminal domain 13 95 IPR041118 -
Cca09g01166 445 Gene3D - 8 119 - -
Cca09g01166 445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 401 IPR027417 -
Cca09g01166 445 PANTHER - 26 397 - -
Cca09g01166 445 PANTHER DISEASE RESISTANCE PROTEIN RP 26 397 IPR044974 GO:0006952
Cca09g01166 445 Gene3D - 335 429 IPR042197 -
Cca09g01166 445 Gene3D - 162 328 IPR027417 -
Cca09g01166 445 Pfam NB-ARC domain 180 397 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01166 Cca-Chr9 33089306 33092688 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01166 196 384 WRKY Transcription Factor Family AT5G45050 30.412 2.22e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01166 K13457 - ccaj:109796490 736.102