Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01164 ATGGCAGAAACTGCAGTGTCCTTGGCTCGTGAGCATTTGCTTCCAAAACTTGTTGAAGCCGTGAAAATGCTTAGAGACCTCCCAAAAGAAGTTGCAGACATTACAGAAGAACTAGAGAGCTTTCAAGATTTCATCAATGATGCTGATAAAGTGGCTGAAGCTGAAGAAGGTGATGCTAAGCGTAATAGAATAAAAAAAAGGGTGATGCGACTGAGAGAAGCAGCTTTTCGCATGGAAGATGTCATTGATGAATATAAGATCATTGAAAATGAGGAAAACCACCTTGATGACCCTCGATGTGCAGCTTTACTATGTGAGGCTGTTGACTTTCTCAAAACTCTCATCCCTCGCCTTCAAATAGCATATAATCTTCGGGATGTTAAATCACTTGTTTCTGCTGAAAGAGATGGCTTCCAAAGGCAATTTCCTTTAGAACCAAGAACAAGCGGTTTTAGAGGAAATAAAATTGTGCCATGGCTCAAACTTCGAATGGATCCTCTCTTTATTAAGGAAGATGAGGTAGTGGGCCTTGACAGCCATAGACTTGTTTTGAAAAATTTGTTGACAAAGGGACGACAAGAACGCACAGTCATCTCTGTTGTAGGAATTCCAGGAGTGGGAAAAACCACTCTTGCAAAGCAAGTCTTTGACAAGGTCTATAAGGACTTCGAGTGCCATGCATCGATCACAGTGTCGCAATACTACGATGTAGAAGCATTGCTAAGGGATATGTTGGACAAGCTTTGCTGCGACAGCATGAAGGATCTTCCTCCGAATGCTTCTCGGATGGATCGAAGGTCGTTGATCGAAGAAATCCAAAAGCAGTTGCGGAACAAGAGGTACGTTGTGCTTTTTGATGACGTGTGGGAAGAAAAATTTTGGGATGACATTGAATCTGTTGTGATAGATGATCACAATAAAAGTAGGATATTAATCACAACTAGGTACGAGGAAGTTGCGGACTTTTGTAAGAAATCTTCGTTTATTGAAGTGCATAAGCTAGAAGAACCATTAAGTAAGGAAGAATGTTACAGATTGTTCTGTAACAAGGCATTTAAGTATGGTTCTGATGGATGTTGTCCAGAAGAGCTTAAAGATATATCTGTTGAAATTGTTAGAAAGTGTAAAGGTTGGGACCGAGCCATTCTTATTATGAGCAAGCACAAGGACTGGTTAAAGAGTTGGTGGAATATTCAAGATAGGAAGATAAGCCAGAATTGGACAACATCTAACTTTCATATCCATACCATCACAAAATTACCTCAATGGCTAGCAGGTTTTTCAATGCAAGCTACGAAGCACAAGCTGGTGGACACCGTAGTGATTGATGGGATTCAGTTGTAG 1344 0.4062 MAETAVSLAREHLLPKLVEAVKMLRDLPKEVADITEELESFQDFINDADKVAEAEEGDAKRNRIKKRVMRLREAAFRMEDVIDEYKIIENEENHLDDPRCAALLCEAVDFLKTLIPRLQIAYNLRDVKSLVSAERDGFQRQFPLEPRTSGFRGNKIVPWLKLRMDPLFIKEDEVVGLDSHRLVLKNLLTKGRQERTVISVVGIPGVGKTTLAKQVFDKVYKDFECHASITVSQYYDVEALLRDMLDKLCCDSMKDLPPNASRMDRRSLIEEIQKQLRNKRYVVLFDDVWEEKFWDDIESVVIDDHNKSRILITTRYEEVADFCKKSSFIEVHKLEEPLSKEECYRLFCNKAFKYGSDGCCPEELKDISVEIVRKCKGWDRAILIMSKHKDWLKSWWNIQDRKISQNWTTSNFHIHTITKLPQWLAGFSMQATKHKLVDTVVIDGIQL 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01164 447 Gene3D - 167 331 IPR027417 -
Cca09g01164 447 PANTHER DISEASE RESISTANCE PROTEIN RP 26 400 IPR044974 GO:0006952
Cca09g01164 447 CDD RX-CC_like 2 129 IPR038005 -
Cca09g01164 447 Gene3D - 4 121 - -
Cca09g01164 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 388 IPR027417 -
Cca09g01164 447 PRINTS Disease resistance protein signature 197 212 - -
Cca09g01164 447 PRINTS Disease resistance protein signature 275 289 - -
Cca09g01164 447 Pfam NB-ARC domain 183 400 IPR002182 GO:0043531
Cca09g01164 447 PANTHER - 26 400 - -
Cca09g01164 447 Pfam Rx N-terminal domain 5 92 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01164 Cca-Chr9 33025053 33028514 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01164 173 382 WRKY Transcription Factor Family AT5G45050 25.701 8.61e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01164 K13457 - ccaj:109796490 582.022