Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01161 ATGGCAGAAACTGCAGTGTCCTTGGCTCGTGAGCATTTGCTTCCAAAAATTGTGGAAGCTGTGAAAATGCTTAGAGATCTCCCAAAAGAAGTTGCAGACATTACAGAAGAACTGGAGAGCTTTCAAGATTTCATAAATGATGCAGATCAAGTGGCTGAAGCTGAAGAAGATGATGGTAGGCGTGATAGAATCAAAAAAAGGGTGATGCGGTTGAGAGAAGCAGCTTTCCGCATGGAAGATATCATCGACGAATTCTCGATTCATGAGGAAAACAATCCTCACGATCCTCGATGTGCAGCTTTACTCTGTGAGGCTGTTGAGTTCATCAAAACTCGGATCCTTCAACTTCAAATAGCATATAAGATTCAGGATGTGAAATCACTTGTTTGTGCTGAAAGAGATGGCTTCCAAAAGCAATTTCCTTTACCAACAAAACCGAGTGGTTCTAGAGGAAATCAGAATGTAACATGGCACAAGCTTCGAATGGATCCTCTCTTTATTGAGCAAGATGAGGTTGTGGGCTTTGAGAGTCCAAGACGTACATTGAAGAATTGGTTGATAGAGGGACGAGAAGAGCGCACTGTCATCTCTGTTGTTGGTTTCGCAGGAGTTGGAAAAACCACCCTTGCTAAGCAAGTTTTTGACAATGTCCATAACAACTTCGAGTGCCATGCATTGAGCACAGTGTCTCAATCCTACACTGTAGAAGGACTGCTGAGGGATATGTTGCACCAGTTTTGTAAAGAAAAGATGGAGAATCTTCCTGCAGATGTTTCTACCATGGATCGAAGATCGTTGATTGAAGAAGTCAGAAAGCAGTTGCGCAACAAGAGGTATGTTGTCATGTTTGATGACGTGTGGAATGAAAAATTTTGGGATGATGTTGAATCTGCTGTAATTGATAATAAAAATAAAAGTAGAATATTAATTACAACCAGATATGAGAAGGTTGCAGACTTCTGTAAGAAATCTTCTTTTATTGAAGTGCATAAGCTAGAAAAACCTTTAAGTGAAGAAGAATGTTTCAGATTGTTCTGTTACAAGGCATTTAAGTATGGTTTTGATGGACGTTGTCCAGAAGAACTTAAAGATATATCTCTTGAAATTGTTAGAAAGTGTAAAGGTTTACCTCTAGCAATTGTGGCCATCGGCGGTCTTTTATCTCAGAAAGATTTTTGA 1179 0.3969 MAETAVSLAREHLLPKIVEAVKMLRDLPKEVADITEELESFQDFINDADQVAEAEEDDGRRDRIKKRVMRLREAAFRMEDIIDEFSIHEENNPHDPRCAALLCEAVEFIKTRILQLQIAYKIQDVKSLVCAERDGFQKQFPLPTKPSGSRGNQNVTWHKLRMDPLFIEQDEVVGFESPRRTLKNWLIEGREERTVISVVGFAGVGKTTLAKQVFDNVHNNFECHALSTVSQSYTVEGLLRDMLHQFCKEKMENLPADVSTMDRRSLIEEVRKQLRNKRYVVMFDDVWNEKFWDDVESAVIDNKNKSRILITTRYEKVADFCKKSSFIEVHKLEKPLSEEECFRLFCYKAFKYGFDGRCPEELKDISLEIVRKCKGLPLAIVAIGGLLSQKDF 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01161 392 PRINTS Disease resistance protein signature 373 387 - -
Cca09g01161 392 PRINTS Disease resistance protein signature 195 210 - -
Cca09g01161 392 PRINTS Disease resistance protein signature 273 287 - -
Cca09g01161 392 PANTHER - 27 390 - -
Cca09g01161 392 PANTHER DISEASE RESISTANCE PROTEIN RP 27 390 IPR044974 GO:0006952
Cca09g01161 392 Gene3D - 335 391 IPR042197 -
Cca09g01161 392 Pfam NB-ARC domain 180 392 IPR002182 GO:0043531
Cca09g01161 392 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 390 IPR027417 -
Cca09g01161 392 CDD RX-CC_like 2 127 IPR038005 -
Cca09g01161 392 Gene3D - 4 119 - -
Cca09g01161 392 Gene3D - 162 330 IPR027417 -
Cca09g01161 392 Pfam Rx N-terminal domain 5 94 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01161 Cca-Chr9 32940740 32941918 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01161 196 384 WRKY Transcription Factor Family AT5G45050 28.421 1.36e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01161 K13457 - ccaj:109796490 751.51