Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01159 ATGGCAGAAACTGCAGCGTCCTTGGCCGGTCAGTATTTGCTTCCTAAAATTTTGGAAGCTTTGAAAATGCTTAGAGATCTCCCAAAAGAAGTTGCAGACATTACAGAAGAACTGGAGAGCTTTCAAGATTTCATCAATGATGCAGATCAAGTGGCTGAAGCTGAAGAAGATGATGGTAGGCGTGATAGAATCAAAAAAAGGGTGATGCGGTTGAGAGAAGCAGCTTTCCGCATGGAAGATATCATCGACGAATTCTCGATTCATGACGAAAACAATCCTCACGATCCTCGATGTGCAGCTTTACTCTGTGAGGCTGTTCAGTTCATCAAAACTCGGATCCTTCAACTTCAAGTAGCATATAAGATTCAGGATGTGAAATCACTTGTTTGTGCTGAAAGAGATGGCTTCCAAAAGCAATTTCCTTTACCAACAAAACCGAGTGGTTCTAGAGGAAATCAGAATGTCACATGGCACAAGCTTCGAATGGATCCTCTATTTATTGAGCAAGATGAGGTTGTGGGCTTTGAGAGTCCAAGACGTACGTTGAAGAATTGGTTGATAGAGGGACGAGAAGAGCGCACTGTCATCTCTGTTGTTGGTTTGGCAGGAGTTGGAAAAACCACTCTTGCTAAGCAAGTTTTTGACAATGTCCATAACGACTTCGAGTGCCATGCATTGATCACTGTGTCTCAATCCTACACTGTAGAAGGACTGCTGAGGGATATGCTGCACCAGTTTTGTAAAGAAAAGATGGAGAATCATCCTGCAGATGTTTCTACCATGGATCGAAGATCGTTGATTGAAGAAGTCAGAAAGCAGTTGCGCAACAAGAGGTATGTTGTCATGTTTGATGACGTGTGGAATGAAAAATTTTGGGATGATGTTGAATCTGCTGTAATTGATAATAAAAATAAAAGTAGAATATTAATTACAACCAGATATGAGAAGGTTGTGGACTTCTGTAAGAAATCTTCTTTTATTGAAGTGCATAAGCTAGAAGAACCTTTAAGTGAAGAAGAATGTTTCAAACTGTTCTGTAACAAAGCCTTTAAGTATGGTTCTGATAGACGCTGTCCAGAAGAACTTAAAGATATATCTCTTGAAATTGTTAGAAAGTGTAAAGGCTTACCTCTAGCAATTGTGGCTATCGGTGGTCTTTTATCTCAAAAAGATTTTTGTGCACATGAATGGATACTGTTTAGTCAAAATCTAAGTTTAGAATTGGAGAGGAATTCTGAGTTAAACAGTATAGGAAAGATTTTAAGTTTAAGTTACTATGATTTGCCGTATAATCTTAgatcacgtttattgtattttgcaatgtatcctgaagattatgaagctaaatctagtagattgattaggcagtgggtaagtgaagggtttgtcaaacatgaaaccggaaaaacattggaagaagttgcacaacaagagttattagagttggtccgcagaagtttggtgcaagcatcttcaattagcattgatggcaaagttaaaggatgtcgtgttcatgacttaatacatgacatgatccttagaaaagctaaggaaacaggattttgtcagtattttgatgagcataatgaatcagtgtcaagtgggatattcagacgcttaataataacaacagattccaatgatttagttggaattgaaagatcacacattcggtcaattctatgtctcaaaaggaacaggttaactaaacaattcatggacagaatctttttaaaatacatgccattgagggtacttgagtttgaaaattttggatcattagattttccaaaagctttatggaatttaatccacttgaagtatctaagctttaggaattcatggataggaagccttccaaaatccattggtgagctccagaacttagagatcttggatgtacgagaaacaatggtggttgacataccaaaggagattagtaagattagaaaactacgttatcttttgggtgatgaaatatcttttgttgcaacaaaagactgtcttggaagcatgacattcctggaaaagatacgggtcctcagagtagatgatgaaggagtggtaattagagagctaggaaagctaaagcaattaaggaacctgagaatttctagtgttagggcagaacacaccaacactctatgttcctccatacatgagatgcagttcttggaggtactacatattcatgtagtaagtggccatgaatttataattgaccttcctcatatgtcatccttgtcaacacttcggaagctctttctacatggaaagttaaaaaagttgtcaaattggattccacagctccaaaatcttgtgaaattatctttggggttctctaggttaactgatgatccattggaatcactaaaagatataccgaatttgttattcatcgatatcagcaataatgcttacgtaggtgaaactttgtattttaaagatgaagggtttcggaaactaaaggagcttcggcttaaggatttgtacaagttgaattgcatctttattgaaagaggagcattgccgtctttggaaaagcttgggttaaagaaaatcacacgactgaggaaagtacccactggaattcaacacttggagacactacaagttctccatgtcgaggatatgccaattgagtttgagcggagcattgatggcgatggaggacaagaccattggatgatccagcacgtgcctcttgtgaaaatTACGGTCTCGCCGTCATTTCAAGTTAGTCGGGTCTGGAAACAATTTCTCCACTTTAAAAAATCAAAAGAAAGGGAGGAGATTGAAGCAAAGGGGAGGGAGATCAAATTCTCAAGTGTCAAAAGAATAAGAGAATAA 2850 0.1958 MAETAASLAGQYLLPKILEALKMLRDLPKEVADITEELESFQDFINDADQVAEAEEDDGRRDRIKKRVMRLREAAFRMEDIIDEFSIHDENNPHDPRCAALLCEAVQFIKTRILQLQVAYKIQDVKSLVCAERDGFQKQFPLPTKPSGSRGNQNVTWHKLRMDPLFIEQDEVVGFESPRRTLKNWLIEGREERTVISVVGLAGVGKTTLAKQVFDNVHNDFECHALITVSQSYTVEGLLRDMLHQFCKEKMENHPADVSTMDRRSLIEEVRKQLRNKRYVVMFDDVWNEKFWDDVESAVIDNKNKSRILITTRYEKVVDFCKKSSFIEVHKLEEPLSEEECFKLFCNKAFKYGSDRRCPEELKDISLEIVRKCKGLPLAIVAIGGLLSQKDFCAHEWILFSQNLSLELERNSELNSIGKILSLSYYDLPYNLRSRLLYFAMYPEDYEAKSSRLIRQWVSEGFVKHETGKTLEEVAQQELLELVRRSLVQASSISIDGKVKGCRVHDLIHDMILRKAKETGFCQYFDEHNESVSSGIFRRLIITTDSNDLVGIERSHIRSILCLKRNRLTKQFMDRIFLKYMPLRVLEFENFGSLDFPKALWNLIHLKYLSFRNSWIGSLPKSIGELQNLEILDVRETMVVDIPKEISKIRKLRYLLGDEISFVATKDCLGSMTFLEKIRVLRVDDEGVVIRELGKLKQLRNLRISSVRAEHTNTLCSSIHEMQFLEVLHIHVVSGHEFIIDLPHMSSLSTLRKLFLHGKLKKLSNWIPQLQNLVKLSLGFSRLTDDPLESLKDIPNLLFIDISNNAYVGETLYFKDEGFRKLKELRLKDLYKLNCIFIERGALPSLEKLGLKKITRLRKVPTGIQHLETLQVLHVEDMPIEFERSIDGDGGQDHWMIQHVPLVKITVSPSFQVSRVWKQFLHFKKSKEREEIEAKGREIKFSSVKRIRE 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01159 949 Pfam NB-ARC domain 180 425 IPR002182 GO:0043531
Cca09g01159 949 PRINTS Disease resistance protein signature 195 210 - -
Cca09g01159 949 PRINTS Disease resistance protein signature 273 287 - -
Cca09g01159 949 PRINTS Disease resistance protein signature 373 387 - -
Cca09g01159 949 PRINTS Disease resistance protein signature 624 640 - -
Cca09g01159 949 CDD RX-CC_like 13 127 IPR038005 -
Cca09g01159 949 Gene3D Ribonuclease Inhibitor 552 888 IPR032675 -
Cca09g01159 949 Gene3D - 6 119 - -
Cca09g01159 949 Gene3D - 160 329 IPR027417 -
Cca09g01159 949 PANTHER - 27 881 - -
Cca09g01159 949 SUPERFAMILY L domain-like 503 886 - -
Cca09g01159 949 Pfam Rx N-terminal domain 13 94 IPR041118 -
Cca09g01159 949 Gene3D - 425 516 IPR036388 -
Cca09g01159 949 Gene3D - 335 424 IPR042197 -
Cca09g01159 949 PANTHER DISEASE RESISTANCE PROTEIN RP 27 881 IPR044974 GO:0006952
Cca09g01159 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 438 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01159 Cca-Chr9 32910676 32914759 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01159 196 384 WRKY Transcription Factor Family AT5G45050 28.421 4.04e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01159 K13457 - gmx:121174068 1124.38