Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01156 ATGGGTATCTCTCGTGATTCCATGCACAAGAGGCGCGCCACTGGTGGCAAGAAGAAAGCTTGGAGAAAGAAGAGAAAGTACGAGCTTGGGAGGCAGCCAGCGAACACAAAGCTGTCAAGCAACAAGACGGTTAGGAGGGTTAGGGTTCGTGGTGGGAATGTGAAGTGGCGTGCTTTGAGGCTTGACACTGGTAACTACTCTTGGGGGAGTGAGGCTGTGACTCGCAAGACTAGGATCCTTGATGTGGTGTATAATGCATCCAACAATGAGCTGGTTCGGACTCAAACTTTGGTCAAGAGTGCTATTGTTCAGGTTGATGCTGCTCCCTTCAAGCAGTGGTATCTGCAGCATTATGGTGTTGATATTGGTCGCAAGAAGAAGAGTGCTGCTGCTTCTGCCAAGAAAGAAGGAGAGGATGCTGAAGCTGCAACTGAGGAGGTGAAGAAGAGTAACCATGTTTTGAGAAAGTTGGAAAAGCGTAAACAGAACCGGGTGCTTGATCCTCACATTGAAGAACAATTTGGAGGTGGTCGCCTTTTGGCTTGTATCTCATCCCGACCTGGCCAATGTGGCCGTGCTGATGGATATATATTAGAGGGCAAAGAGCTAGAATTTTACATGAAGAAGCTTCAGAGGAAGAAGGGCAAGGGTGCTGCATAA 660 0.4833 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKSAAASAKKEGEDAEAATEEVKKSNHVLRKLEKRKQNRVLDPHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAA 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01156 219 Pfam Ribosomal protein S8e 5 198 IPR022309 -
Cca09g01156 219 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Cca09g01156 219 TIGRFAM eS8: ribosomal protein eS8 1 200 IPR001047 GO:0003735|GO:0005840|GO:0006412
Cca09g01156 219 MobiDBLite consensus disorder prediction 1 42 - -
Cca09g01156 219 Coils Coil 140 160 - -
Cca09g01156 219 MobiDBLite consensus disorder prediction 11 26 - -
Cca09g01156 219 Gene3D - 32 162 - -
Cca09g01156 219 Gene3D - 163 216 - -
Cca09g01156 219 PANTHER 40S RIBOSOMAL PROTEIN S8 1 219 IPR001047 GO:0003735|GO:0005840|GO:0006412
Cca09g01156 219 PANTHER 40S RIBOSOMAL PROTEIN S8 1 219 - -
Cca09g01156 219 CDD Ribosomal_S8e_like 5 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01156 Cca-Chr9 32845021 32847775 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01156 1 207 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 84.058 2.21e-127 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01156 K02995 - gmx:100527325 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01156 09 32845021 32847775 Cca09g01156 09 32845021 32847775 ECH