Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01152 ATGCCACAGAGAAAAGCTTGCAGTATTGTGAATGAGCCTCGTCTTGTGGCCAGGAAACTCTTGGCACGACCTCAGCATGAGGGTGTTGGTGCTGTTGTTAGAAGAAGCATAGGGAGGTTTGAGCTCAAGTACTTTGATCCCTTCCTTGTGTTGGATGAATTCTCAGTTACTGCACCTGCTGGTTTTCCTGATCATCCTCACAGAGGCTTTGAGACAGTCACATATATGTTACAGGGAGCTATAACACATGAAGACTTTGAAGGACACAAGGGGACAATAGAAGCCGGTGACTTGCAATGGATGACTGCAGGGAGAGGGATAGTTCACTCAGAAATGCCTGCAGCTCAAGGCACCCAAAAGGGTCTGCAATTGTGGATCAACCTAGCCTCCAAATATAAAATGATTGAACCAAGGTATCAAGAAGTGTTGAGTAAGGACGTAGCAGAAGCTGAGGATGATGGTATCAAAGTTAGGGTAATAGCTGGGGAAGCACTAGGTATAAAGTCTCCAATCTACACAAGAACCCCTACCATGTTCTTGGACTTCTCTCTGAAACCTGGGGGTCACTTGCAACAACCTATACCAAAATCTTGGAATGCTTTTGTCTATGTTTTGGAAGGAGAGGGTACCTTTGGAAACATGAAATCTCAGCCTACAAACTCTCACCATATTCTTCTTCTTGGCCCTGGTGGGGATGGTCTAGAGGCATGGAACAAATCTTCTAAGCTGCTTAGGTTCATTTTGGTTGGAGCAGAACCTCTTGGGGAACCTTTGGTGCAATTTGGACCCTTTGTGATGAACAATCAAGAAGAGATTGATCAAACCATTGATGATTTTGAGAACTTTGCCAACGGATTTGAGAAAGCAAGACACTGGAGATCTGAAACCGCAAGTGATCTTGATTATTGA 909 0.4444 MPQRKACSIVNEPRLVARKLLARPQHEGVGAVVRRSIGRFELKYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGAITHEDFEGHKGTIEAGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLASKYKMIEPRYQEVLSKDVAEAEDDGIKVRVIAGEALGIKSPIYTRTPTMFLDFSLKPGGHLQQPIPKSWNAFVYVLEGEGTFGNMKSQPTNSHHILLLGPGGDGLEAWNKSSKLLRFILVGAEPLGEPLVQFGPFVMNNQEEIDQTIDDFENFANGFEKARHWRSETASDLDY 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01152 302 CDD cupin_pirin_N 31 128 - -
Cca09g01152 302 Gene3D Jelly Rolls 148 254 IPR014710 -
Cca09g01152 302 PIRSF Pirin 12 293 IPR012093 -
Cca09g01152 302 Pfam Pirin C-terminal cupin domain 179 284 IPR008778 -
Cca09g01152 302 Gene3D Jelly Rolls 27 280 IPR014710 -
Cca09g01152 302 PANTHER PIRIN-RELATED 5 299 IPR012093 -
Cca09g01152 302 Pfam Pirin 33 126 IPR003829 -
Cca09g01152 302 PANTHER OS09G0484800 PROTEIN 5 299 - -
Cca09g01152 302 CDD cupin_pirin_C 176 253 - -
Cca09g01152 302 SUPERFAMILY RmlC-like cupins 14 295 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01152 Cca-Chr9 32818774 32822447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01152 13 290 Calmodulin-binding Proteins AT3G59220 58.929 1.05e-124 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01152 K06911 - gmx:100802484 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01152 09 32818774 32822447 Cca09g01152 09 32818774 32822447 ECH
Cca09g01152 09 32818774 32822447 Cca05g01991 05 39808189 39811920 PCT