Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01143 ATGGCTTCTTCAGATGATGAGGGAGAGGCTCAGCCATTATCTATAGTGAATTACCATTTTCAAGATGACGACGAAGGGCCTGTGTCTTTTTCTGTGTTGCCAATTCAGTGGAGTGAGTCTGAGAGTCCAGTTGGTAAAAAAAAGCAGGTGTTCTTGAACGGTTATGTGGATAACGGACTGAAGAAATTTTTCACTCAAGTTGTTGCGTGGAGGTTTGATCTTTCCTATGTAAGGCCGGAGATATCGGTGCTTTCTAAGGATGTGAAATGGATTAAACTTGAGAGGCCTAGGAAGAGCTATGAGGATATCATAAGGACTATTTTGATCACCATTCACTTCCTGAGTTATGTGAAGAAGTATCCTGACACATCTGCCAAATCTTTGTGGGATAACTTGAGCAAGAAAAAGGAGTTTAGATCTTATGAGGTTATGCCTTCACAAAAAGATTTATTAAATCATATGGTTTTAATGGGGGAAGCTGCCAAAAGAGATGATGTTTTAGCAAAGTCCAAGCTTTTGCTCATGGTTCTGGAAGATAAGGATAAGCCGAATATTAGGAAACTATCTGATGAGGAAGTTAAAGATTTAGCACGACCTGGATTTATAATTGATGATATTGACAATGATATGATTGATGAAGCTGTTGAAGATTCAGATGGAGAGGAAGAGTTGTTTGATTCTGTTTGTGCAATTTGTGACAATGGTGGTGAACTTTTGTGTTGTGATGGAAAGTGCATGAGGTCTTTTCATGCTAATGAGGAGGATGGCGAAGAATCTGCTTGTGCCTCTCTTGGTTTTAGCCAGAAGGAAGTTGATGAGATCCAAAACTTTTACTGCAAGAATTGCGAATATAATCAACATCAGTGCTTTGCATGTGGCGCACTAGGCTGTTCTGATAAATTTTCAGGTGCTGAGGTCTTCAAATGTGCTTCTGCAACCTGTGGCTTCTTTTATCATCCACATTGTGTTGCAAAGTTACTTCACAAACTGGTTGAGGATGCCCCAAAGGAACTTGAGAGAAAAATTGCCGCGGGGGGACCTTTTACTTGTCCAACTCATTATTGCCGTGTTTGTAAAGAAATGGAAGACAAGAAGAAACATGACTCACAATTTGCTGTTTGTAGGCGTTGCCCCAAGTCTTATCACCGCAAATGTTTGCCAAGAACAATTGCTTTTGATGACATTGAGGATGAAGGTATTATAACAAGGGCTTGGGAAGGACTTCTACCAAACAATCGGATTCTTATATATTGTTTAAAACATGAGATCGATGATGAACTTGGGACTCCTATAAGAGATCATATAAAGTTCCCCCAAGTTAAAGCTGCTACTGTTCGAGAAATTAATACTGAGGAGAATGTAAAGCCTGGTACGAAAGAGAGAGTTATATTGAACAAGAATGATATAGACTCAGAAAATTTATTTGGCAAAAGAACTATTGCTAAAGTTTCTAAACTGTCTGGTAAAATTTCTTCTGGGAAAGTTGGTGACAAGAAGTCTGTAAAGATTTCTGAATCAAATATATCAAGGAATAAAACAAATGAAGCATCAAGAAGGTCTTTGAATGAAAGTAAGAGGTTAATTTCAAAGGCAACCAGAAAGTCTGATGCTGTGGAAAACAGGCCCTCATTGGGTGAAAAATTATTTGCTTTCTATCAGAGCAGATCTGAGCAAATTAATTCTGCTAATCAGGTTGAGGATGTAGCTAATAGTACCCTGCCTATTAGGCCTGCTAAAAAGCTGAGTAGTACATTGCCCCCATTAGATGCAGATTCAGAGAAGAGATTGTTGGCTTTGTTTAAAGAAGCTACTTCATCAATTACTTTGGAGAATGTTATAAAAGAGCACAAATTTGCTTCTACTCATACTCACTCATTGAAAAATGTTGTGGAAAAGACCATTACATTGGGGAAATTGGAAGGCTCAGTTGAGGCTGTTCGAACAGCCCTAAGGATGCTAGAGGATGGGCACAATATTCGGGATGCAGAAGCTGTATGTGGTCCTGATGTTCTAAACCAGATATTTAAGTGGAAGGACAAGCTGAAAGTATATCTTGCACCTTTTCTAATTGGTAACCGCTATTCATCATATGGCCGCCATTTTACACAAGTTGAAAAGCTGGAAGGGATTGTTGATAAACTCCATTGGTATGTTCAGAATGGTGATACAATTGTGGACTTCTGTTGTGGTGCTAATGATTTTAGCATTCTTATGAAGAAAAAGCTGGACGAGACAGGGAAGAGATGCTCATACAAAAACTTTGATTTACTTCCAACAAAGAATGATTTTAATTTTGAGATGAGAGATTGGATGACTGTCCAACCAAATGAGTTGCCTTCAGGGTCACAGTTGATCATGGGCCTCAACCCCCCCTTTGGACTTAAGGCAGCTTTGGCTAACAAGTTCATAGATAAAGCTCTACAGTTCAAGCCTAAGCTCCTGATTCTCATAGTACCATCAGAGACAAAGAGGCTAGATGATAGACGGTCGACTTATGATCTTGTTTGGGAGGATGAGAGGTTTCTATCGGGCAAGTCATTTTATCTACCTGGATCAGTTGATACTAACGACAAGCAAATAGAACAATGGAATGTAAAGCCACCCCCACTCTATCTTTGGAGTCGTCCTGATTGGACTGATAAGCACAAGGCCATAGCTCGGGAGCATGGTCACCTCATCAGTCACCATGAGGTGTCTAAAATGGAAAGCTTTGATAAAGGAACATCACCTGCCAGTCATAATGTGGATGATAATTATGGTTTTGATATCACGCCAGGGCATGATATATTGAATTCAGCTGAGGCAGATATGAGTGATGGCCAGACAGGATGCTCATCGCATGGAAATGTTGATCGAGAGGGCCAAGAGAGACAGGAATATCGGGCGAGCAAGGCTGAGAAGACCTCATTAAAGAGGAAACGAACTGAGGAAAATGATGGAAGAGGACTAGGTGGGACCTCACCATCCAAAAGGCAGGTTGTAAATCAAATGCTTGAGGGAGTACTGGACCATAGCGAACCCAATCCAATTTGTGGGAGATCCTCAGTTGAACGTTTTCAGCCCAAACCTGACATGCCACCTCCAGATTTTGAGCTTGGTGATAAAGGTTATAGGCATTTGGAGCCTACCTCTTCTTCACGTTTGGGGGGGCTAAGAGCAGTCTATAGTGGGTCCCAGAATTGGTCGAGTGTTGCCAATCCCCATTATGATGCTGGGGTTACGGATGTAGATGAACACCATAGCAGCCTCGGCGGCAGTAACGTTGGATATAGACCTTATGTTAGAGAGGATGATAACTACATTAGGGAATTAGAGGCAAGGCAACAGACTCGCCATTATGGGCTTCTGAATCCTAATTCTGTGACGTCTAATTATCTATCTGGTCATGACCCAGCTCATAGCCGCCCCATGGGATCAAGTTATCCACTCCATGGTTCATTATCCGAGTCTTACACACCAGCCATGCAACGATATGCACCTCGCCTAGATGAGTTAAACCATGTCCGGATGGATCCTTTGGGGTCTGAACCTCCTATAGTTGGTAGAAACGGCACTTTTGAACGTAGCATGCCCCAACCTGGAAATGGAAGTTCGATGCCAGGTTTTGCCGCTGGTTATCACCATGTGTATTCACGCCAGAATTCATCAGACTGGTTCAATGGTTAG 3666 0.4152 MASSDDEGEAQPLSIVNYHFQDDDEGPVSFSVLPIQWSESESPVGKKKQVFLNGYVDNGLKKFFTQVVAWRFDLSYVRPEISVLSKDVKWIKLERPRKSYEDIIRTILITIHFLSYVKKYPDTSAKSLWDNLSKKKEFRSYEVMPSQKDLLNHMVLMGEAAKRDDVLAKSKLLLMVLEDKDKPNIRKLSDEEVKDLARPGFIIDDIDNDMIDEAVEDSDGEEELFDSVCAICDNGGELLCCDGKCMRSFHANEEDGEESACASLGFSQKEVDEIQNFYCKNCEYNQHQCFACGALGCSDKFSGAEVFKCASATCGFFYHPHCVAKLLHKLVEDAPKELERKIAAGGPFTCPTHYCRVCKEMEDKKKHDSQFAVCRRCPKSYHRKCLPRTIAFDDIEDEGIITRAWEGLLPNNRILIYCLKHEIDDELGTPIRDHIKFPQVKAATVREINTEENVKPGTKERVILNKNDIDSENLFGKRTIAKVSKLSGKISSGKVGDKKSVKISESNISRNKTNEASRRSLNESKRLISKATRKSDAVENRPSLGEKLFAFYQSRSEQINSANQVEDVANSTLPIRPAKKLSSTLPPLDADSEKRLLALFKEATSSITLENVIKEHKFASTHTHSLKNVVEKTITLGKLEGSVEAVRTALRMLEDGHNIRDAEAVCGPDVLNQIFKWKDKLKVYLAPFLIGNRYSSYGRHFTQVEKLEGIVDKLHWYVQNGDTIVDFCCGANDFSILMKKKLDETGKRCSYKNFDLLPTKNDFNFEMRDWMTVQPNELPSGSQLIMGLNPPFGLKAALANKFIDKALQFKPKLLILIVPSETKRLDDRRSTYDLVWEDERFLSGKSFYLPGSVDTNDKQIEQWNVKPPPLYLWSRPDWTDKHKAIAREHGHLISHHEVSKMESFDKGTSPASHNVDDNYGFDITPGHDILNSAEADMSDGQTGCSSHGNVDREGQERQEYRASKAEKTSLKRKRTEENDGRGLGGTSPSKRQVVNQMLEGVLDHSEPNPICGRSSVERFQPKPDMPPPDFELGDKGYRHLEPTSSSRLGGLRAVYSGSQNWSSVANPHYDAGVTDVDEHHSSLGGSNVGYRPYVREDDNYIRELEARQQTRHYGLLNPNSVTSNYLSGHDPAHSRPMGSSYPLHGSLSESYTPAMQRYAPRLDELNHVRMDPLGSEPPIVGRNGTFERSMPQPGNGSSMPGFAAGYHHVYSRQNSSDWFNG 1221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01143 1221 MobiDBLite consensus disorder prediction 1174 1200 - -
Cca09g01143 1221 Pfam Cytosine specific DNA methyltransferase replication foci domain 14 134 IPR022702 -
Cca09g01143 1221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 225 285 IPR013083 -
Cca09g01143 1221 Coils Coil 521 541 - -
Cca09g01143 1221 MobiDBLite consensus disorder prediction 935 949 - -
Cca09g01143 1221 CDD PHD3_NSD 354 387 - -
Cca09g01143 1221 MobiDBLite consensus disorder prediction 505 524 - -
Cca09g01143 1221 MobiDBLite consensus disorder prediction 897 991 - -
Cca09g01143 1221 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 1 1216 - -
Cca09g01143 1221 MobiDBLite consensus disorder prediction 950 980 - -
Cca09g01143 1221 CDD PHD2_NSD 288 353 - -
Cca09g01143 1221 PANTHER ENHANCED DOWNY MILDEW PROTEIN 1 1216 - -
Cca09g01143 1221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 398 IPR013083 -
Cca09g01143 1221 SMART PHD_3 228 283 IPR001965 -
Cca09g01143 1221 SMART PHD_3 288 354 IPR001965 -
Cca09g01143 1221 SMART PHD_3 355 422 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01143 Cca-Chr9 32692262 32718265 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01143 226 323 PHD Transcription Factor Family AT3G14980 32.653 8.14e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01143 - - gmx:100803073 1999.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01143 09 32692262 32718265 Cca09g01143 09 32692262 32718265 ECH
Cca09g01143 09 32692262 32718265 Cca05g01987 05 39733103 39745200 PCT