Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01139 ATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCCGTGAAACTCGCGGATGATATAAGTGGCATGATTTCTGAGCGCAGTTCATTCCCTGCATCTGGACCAGAAACTCAGCGCCATGCATCTGCTATAAGAAGGAAGATCACGATATTAGGGACCAGACTTGATAGCTTGCAATCTCTTTTGTCAAAGTTCCCTGCAAAAACTGAGAAGGAGATGAACCGTCGCAAGGACATGCTTGCAAATTTGAGGACCAAAGTCACCCAAATGGCTTCAACATTGAACATGTCCAACTTTGCAAATAGGGATAGTTTGCTTGGCCCAGAAATAAAACCAGATGCAATGAGCAGAACCGTAGGCCTGGACAACAGTGGGCTAGTTGGTCTACAACGCCAAATTATGAAAGAGCAAGACGATGGCCTTGAGAAATTGGAGGAGACTGTAATCAGTACAAAACATATTGCATTGGCGGTGAATGAAGAGCTGGATCTACACACCAGGCTCATTGATGACTTGGATCAACATGTAGATGTTACAGATTCTCGGCTGAGGCGAGTGCAGAAGAACTTGGCAATTTTGAACAAACGTACCAAGGGTGGTTGCTCCTGCTTGTGCTTGCTTTTATCAGTGATTGGTATAGTGGTCTTGGTTGTTGTCATATGGCTATTGATCAAATATTTGTAA 690 0.4362 MASSSDSWMKEYNEAVKLADDISGMISERSSFPASGPETQRHASAIRRKITILGTRLDSLQSLLSKFPAKTEKEMNRRKDMLANLRTKVTQMASTLNMSNFANRDSLLGPEIKPDAMSRTVGLDNSGLVGLQRQIMKEQDDGLEKLEETVISTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCSCLCLLLSVIGIVVLVVVIWLLIKYL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01139 229 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 1 223 - -
Cca09g01139 229 CDD SNARE_Qc 136 193 - -
Cca09g01139 229 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 133 195 IPR000727 -
Cca09g01139 229 PANTHER SYNTAXIN 1 223 IPR045242 -
Cca09g01139 229 Pfam SNARE domain 170 221 IPR000727 -
Cca09g01139 229 Gene3D - 135 197 - -
Cca09g01139 229 SMART tSNARE_6 128 195 IPR000727 -
Cca09g01139 229 SUPERFAMILY SNARE fusion complex 124 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01139 Cca-Chr9 32597506 32602812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01139 1 229 SNARE and Associated Proteins AT1G16240 71.552 1.31e-123 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01139 K08503 - gmx:100794038 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01139 09 32597506 32602812 Cca09g01139 09 32597506 32602812 ECH
Cca09g01139 09 32597506 32602812 Cca05g01984 05 39717368 39719795 PCT