Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01126 ATGGGCAAGGGCGGAACCGCGGCGGCGGTGGAGATCGGCGAAACCGGTTCAAGGCCGGTTTTTTTCAGAGAACCGAGATACAGAGGCGTCAGAAAAAGACCGTGGGGCCGGTTCGCCGCCGAAATCCGAGACCCTTTGAAGAAAGCTAGGGTTTGGCTCGGAACCTTCGACACCGCCGAGGAGGCGGCGCGTGCGTACGACACGGCGGCGAGAAACCTCCGGGGACCCAAGGCAAAGACCAATTTTCCCCTTTCTCCGCCGTTTTACCACCCTGATCCATTTTCCGACCACCAGTACTTCGCCGGCGCCGGCGAAGGCTTCCACGATCACCGGCGGCCGACCACTAGCGGCATGAGCAGCACCGTTGAGTCTTTCAGCGGCCCGCGGCCCGTCGGGACGGCGACTGTGCCGGTGCCGGCGGTTGCCGATCGGAGATACCCGCGGACCCCGCCGGTGGTCCCCGAGGACTGCCGCAGCGACTGCGACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCGGCGTTGGCCGATCGGAGATACCCGCGGACCCCGCCGGTGGTCCCCGAGGACTGCCGCAGCGACTGCGACtcgtcgtcctccgtcgtggacgacggcgacggcgacaacgtggcgtcgtcgtTCCGGCGCCAACCGTTGCCGTTTGACCTAAACGCGTTGCCGTTAGAGGACGCTGACGTGGCAAACGGCGTTTGCGACGATGATCTGTTCTGCACCGTTCTTTGCCTCTGA 951 0.4585 MGKGGTAAAVEIGETGSRPVFFREPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDTAEEAARAYDTAARNLRGPKAKTNFPLSPPFYHPDPFSDHQYFAGAGEGFHDHRRPTTSGMSSTVESFSGPRPVGTATVPVPAVADRRYPRTPPVVPEDCRSDCDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALADRRYPRTPPVVPEDCRSDCDSSSSVVDDGDGDNVASSFRRQPLPFDLNALPLEDADVANGVCDDDLFCTVLCL 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01126 316 CDD AP2 25 85 IPR001471 GO:0003700|GO:0006355
Cca09g01126 316 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 241 294 - -
Cca09g01126 316 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Cca09g01126 316 SUPERFAMILY DNA-binding domain 26 85 IPR016177 GO:0003677
Cca09g01126 316 MobiDBLite consensus disorder prediction 113 128 - -
Cca09g01126 316 MobiDBLite consensus disorder prediction 243 276 - -
Cca09g01126 316 PANTHER ETHYLENE RESPONSE FACTOR 241 294 - -
Cca09g01126 316 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 163 - -
Cca09g01126 316 MobiDBLite consensus disorder prediction 100 135 - -
Cca09g01126 316 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Cca09g01126 316 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Cca09g01126 316 PANTHER ETHYLENE RESPONSE FACTOR 1 163 - -
Cca09g01126 316 Pfam AP2 domain 25 75 IPR001471 GO:0003700|GO:0006355
Cca09g01126 316 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Cca09g01126 316 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01126 Cca-Chr9 32385168 32386118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01126 245 316 AP2-EREBP Transcription Factor Family AT1G50640 61.111 8.18e-06 44.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca09g01126 AP2 3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01126 K09286 - gmx:100782025 272.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01126 09 32385168 32386118 Cca09g01126 09 32385168 32386118 ECH
Cca09g01126 09 32385168 32386118 Cca05g01966 05 39485010 39487269 PCT