Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01123 ATGGCTTTCCCTCCATTCCGTCGATCTCACTTGCGCAGCCACACTTACCAGACCCTTGTTCACATCTTCTCTCACCTTTCTGCGTACAACACGTCACTTCAAACAAAAACTCAACCCCTCAGCATTCCTGTTCAAGATAATGGAAGTGGTAGAATTGAGCAAGAGAACCAGGAAAAGGAGCCTAAGTCCTCTGATATTGTTGATTTTGATTTTGTGGATCCTGGGGACCCTGTAGGCCAAAAGGAAATACAGGAGGTCGAGAAGACCATTGAGGGGGTTGGAGACAGGGATATGGATATTACTTCCTATAAGATGATCTTAGATGATATAGAACATTCGATGGGAATTGAGGAAATGTCTACCCAAACAAATGGTTTTGATAAGGAGCAGAAGATAATGGAAGAGTTGGAGCTGGTTGTGAAAGGTACTGAAGAACTTGTTTGTGATAGTGGTTTAATCCCCTCGAACTCGGGATTGAATGGGAAAAATAATGATGGCAGTGAAGTTGGGTTGATGGAACACCAAGTAGATGATGTTGAATTTTTGCATTCTTGTGTGAACTCATCTAGAAATGCCAGTCTGTTGAAAGAACCAGAAGATCTTAATCAACTTGTCTCTAAAGGATTTGATATGACTTCAATGTTTAATATGTCCACATCAACCAAGGGACAAGTTGCTGCACCGGTAATAAGTGCATCAAGTTCAAAGCATGAAAGTCAACAAAATGAAACAGAATTGGTGAAATCTGTTTGTGCCGTAGTAGGATCTGGTGAAAAGCTAATTTGTGAGAACAGTGCAACAAATTCTTCTAATATTCTAACAAAAAAAGGAGACATGGAAGATGGAGAAATTTTTGGAGACTTGGGCATAGATGGTAATTCATTTGATGCGTCTTCTGCAGATGCCCTAATTTTACAACAGATGGAAGTTGATgaggttcagaagcctgaaaatgtatctggaaacatgatatatccttctaagattgagaatcaagaaAAGGAAAAGGGCTATGACTCTAATTCCTCTATGGTAAATGCACTTCAAGATGCCAATAATAGTGGACAAGTGGAACCTAGAACTAGTGGTGAAAAAGGAATTTCATGTGGAGTTGAAGCAGCAACCTCTCATGAAACTATTGAATGTGAGAAGGCAGGTGTGTGTGGTTCTATTCTAAAGCCCAGAAATAGCAAATCTGGACACATTGCATGTAAAGGGATTGATGGCATGCTGACAAATTTAAGTCGAAATCAAGTCTTTTATGGAGATTTATTGGAAGAAACTGCTGCCAAAAGTCATGGAAACACATCTGCTATTAAGTTGGTTAATGCCAGTAGAAAGAGAAAGCATGGTCTTGGAGCTGAGGAGAAGGAAGATAAAAATAAGTTGGTTAATGCCAGTAAAAAGAAAAAGTGTGGTCAGAGTGCTGAAAAGAAGCAAAAAAAAAAGATAACATATAGAAAGAGGCGAGCAGAAAAGAACAGAGAACTGGGTGTTAAAACTTTGCAGTTGCAGCATGTACAGAAACCGAAAACTGTCTCACACTGTCGCCATTATCTCATGGGAAGGTGCCACGAGGGTGACAAGTGTCTGTTTTCACATGATGTAGTGCCTCTAACAAAATCCATGGCATGTGTTCACTTCGCTCGTCACTCTTGCATGAAAGGGGATGACTGCCCATTTGATCATCAGCTCTCAAAATATCCTTGTAACAATTTTGTGTCCACCGGTTCTTGTTCCAGAGGAGATGCTTGCTTGTTTTCACACAAGGTAACAACCAATGAGGATATCCATAAGCCTTCAAATGTTTGCAAACCAGGGTTGAAGTCTCCACATCTGTCAGGACATGCAAATTTCAGTACCCCACCTAACAATCATGCCTCTAGTTCTGTCCGGCAAAACCACTTTACTAATTCGGCAGGAATTCATTCTCACCTCAATGATGAATGTAAGGTGACAGACATTCTACATAAACAACCCACACCACCTAAAGGAATTAGTTTCATCAATCTTGCGAAATTATCACCCAGCCTAAGTACACTGAAACAAGGCGCAGTAACAACCAAGGAAATTCCTGTACACACTCGGGAAGATCAAACTGCATCTGACAAAACTCAAAACAAAGTGGAAATTCCTAAAAAATTGCCAGCTGTTACACCTAAGGGAGTTAACTTTCTTTCTTTTGGCAAAGGTTCTGTCTGCAGTTTTAAAAGTCCTATTTGCTCCAATGCGAATAGGGAAAATGGTATCAAGTTGCCTCAGTTACTCACTTTTGGTTTGCCTGCAAAGGCAAGTTCGTCTCTAAATAAGGATGATCACGACAAAGCTTGTGACAGAACAAAACAAAATGTACCACAGACTGATATATTCTTAAATGAGATTTTAGAAAAAAAACAGTCTGTGGCAGACGGAATGAAATCAAAGTTATCAGAGAAAACCTTGGTAAATGTTTCTATGAGGGATCACAGCCATAGTAAATCAGTTCAAGAGGGAAAAGGGTCATCTAATAATTCTCAGAGTTCAAATGTGACCTCAGCTACACTTCGTCCATTTGTTTCAAATCAGTCTTCTGAAGGCCTATTATCTGGTTATCATAAGCATGTGTCAAACTCAGCCCAAAGGGCACTCTTATCAACTTTAGCATTTGCATCAGAGCATGAATCTGATATTAAGATGAAATACCCTACTGGTGGTTCGTCAGTATGA 2706 0.3899 MAFPPFRRSHLRSHTYQTLVHIFSHLSAYNTSLQTKTQPLSIPVQDNGSGRIEQENQEKEPKSSDIVDFDFVDPGDPVGQKEIQEVEKTIEGVGDRDMDITSYKMILDDIEHSMGIEEMSTQTNGFDKEQKIMEELELVVKGTEELVCDSGLIPSNSGLNGKNNDGSEVGLMEHQVDDVEFLHSCVNSSRNASLLKEPEDLNQLVSKGFDMTSMFNMSTSTKGQVAAPVISASSSKHESQQNETELVKSVCAVVGSGEKLICENSATNSSNILTKKGDMEDGEIFGDLGIDGNSFDASSADALILQQMEVDEVQKPENVSGNMIYPSKIENQEKEKGYDSNSSMVNALQDANNSGQVEPRTSGEKGISCGVEAATSHETIECEKAGVCGSILKPRNSKSGHIACKGIDGMLTNLSRNQVFYGDLLEETAAKSHGNTSAIKLVNASRKRKHGLGAEEKEDKNKLVNASKKKKCGQSAEKKQKKKITYRKRRAEKNRELGVKTLQLQHVQKPKTVSHCRHYLMGRCHEGDKCLFSHDVVPLTKSMACVHFARHSCMKGDDCPFDHQLSKYPCNNFVSTGSCSRGDACLFSHKVTTNEDIHKPSNVCKPGLKSPHLSGHANFSTPPNNHASSSVRQNHFTNSAGIHSHLNDECKVTDILHKQPTPPKGISFINLAKLSPSLSTLKQGAVTTKEIPVHTREDQTASDKTQNKVEIPKKLPAVTPKGVNFLSFGKGSVCSFKSPICSNANRENGIKLPQLLTFGLPAKASSSLNKDDHDKACDRTKQNVPQTDIFLNEILEKKQSVADGMKSKLSEKTLVNVSMRDHSHSKSVQEGKGSSNNSQSSNVTSATLRPFVSNQSSEGLLSGYHKHVSNSAQRALLSTLAFASEHESDIKMKYPTGGSSV 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01123 901 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 569 589 IPR000571 GO:0046872
Cca09g01123 901 SUPERFAMILY CCCH zinc finger 510 535 IPR036855 GO:0046872
Cca09g01123 901 MobiDBLite consensus disorder prediction 39 65 - -
Cca09g01123 901 ProSiteProfiles Zinc finger C3H1-type profile. 539 563 IPR000571 GO:0046872
Cca09g01123 901 MobiDBLite consensus disorder prediction 829 844 - -
Cca09g01123 901 ProSiteProfiles Zinc finger C3H1-type profile. 510 537 IPR000571 GO:0046872
Cca09g01123 901 MobiDBLite consensus disorder prediction 815 844 - -
Cca09g01123 901 SMART c3hfinal6 567 591 IPR000571 GO:0046872
Cca09g01123 901 SMART c3hfinal6 509 536 IPR000571 GO:0046872
Cca09g01123 901 SMART c3hfinal6 539 565 IPR000571 GO:0046872
Cca09g01123 901 SUPERFAMILY CCCH zinc finger 568 595 IPR036855 GO:0046872
Cca09g01123 901 ProSiteProfiles Zinc finger C3H1-type profile. 564 592 IPR000571 GO:0046872
Cca09g01123 901 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 252 896 IPR045124 GO:0003723|GO:0045892
Cca09g01123 901 PANTHER PROTEIN SUPPRESSOR OF SABLE 252 896 - -
Cca09g01123 901 Gene3D - 500 567 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca09g01123 zf-CCCH 4.8e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01123 - - aprc:113854397 1040.8