Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01119 ATGGAAGCTTCATGCAATGATGACTTGATTGACTTCCATTATAATGTTGCAGCAGTTACACATTTTTCACCGACGATGTCATTTAATGGGACACGACTAGTCGTGGATGAGATGGATTTCTTGGTAGAGAAGAAGGGAAGTGCAGTTGATGATGATGATCAAATGGTGCAACCAATGGAGCTTCATGTAGATACTAGTTTAGATCTCCTTACAAAGAGTTCCACTAGCAATATTAGATCAACTATAGAAGAAGGATCCTTGGAGGCAAGGGAGAACAAGGGAAGTAAGCTAGCCATGCTCGCTGAATTGCACCACATGAGTGCTGAAAATCAACGCTTGAGAGAGCTGGTTGATCAGGTGAACGATAAGTACAATACCCTACACAAGCATCTTATGAAACTCAAGGAGAAACAACATAACAACAAGATTAAAGGAGCCATAGAGGAAAAGGGTGAGAAAGATGACACGATTACAAGGGCATTCTTGGATACTGGAGTTGCCATGACAGAAGAGACTTGGCAGCTGTTGCGGAAACTGCAAGAAAGCAAAAGCATGATTGACTTGATGGAGTGCAAGACTGAGAAGATTTGCACTGGCAGGGATAGTGCAAAATCCATAAGAGATAAGCGAAAGAGTGAAGATGAGAAAGCTATTCCGGGGTGGCTCTCAAACGAAGTCACAAGATTGAGTTCGTTAAGGGATGTTGATCAAGCATCAGAAACCATGTCAATGATCAAGAAAGCCCGCGTATCAGTTCGAGCAACAACAGATTATCCTATGATTTCAGATGGTTGTCAATGGAGAAAGTATGGTCAGAAGATAGCAAAAGGGAATCCGTGTCCGCGAGCTTATTATCGTTGCTCAATGGGGACAGGTTGTCCAGTAAGGAAACAAGTACAAAGATGTGCTGAAGATCAAAGTGTGTTGATCACAACATATGAAGGGCAACATAATCATGTACTCCCTCTCAGTGCCAAGGCAATGGCATCCACCACATCTTCAGCTGCATCAATGCTTCTTTCAGGATCGATGCCAAGCTCAGATGGCCTTATACACCCAAACATATTACAAAGTGCAACACTTCCATTTTCACAAAACCTAGCCACCCTCTCAACTTCAGCACCATTTCCAACTATTACTTTGGATCTCACTCAAAGTGCTACCACTAATTCCTCACAAGGGGCACCACAGAAGTTTCTTGACCAAACTAAGCTTTTCAACTTACATGGGTATCAAGGAACAAAAACGGCTTCATTTATGGACATGGTAAATGCAGCAACATCTGCTATCACTTCTGACCCGAAATTTAGTGTAGCTCTTATGGCTGCCATAACATCTATTATTGGAAGTTCACACTCAAACAATATTAACGGTGCAAGTGGAGATCCAACGTTTCAATAA 1401 0.4211 MEASCNDDLIDFHYNVAAVTHFSPTMSFNGTRLVVDEMDFLVEKKGSAVDDDDQMVQPMELHVDTSLDLLTKSSTSNIRSTIEEGSLEARENKGSKLAMLAELHHMSAENQRLRELVDQVNDKYNTLHKHLMKLKEKQHNNKIKGAIEEKGEKDDTITRAFLDTGVAMTEETWQLLRKLQESKSMIDLMECKTEKICTGRDSAKSIRDKRKSEDEKAIPGWLSNEVTRLSSLRDVDQASETMSMIKKARVSVRATTDYPMISDGCQWRKYGQKIAKGNPCPRAYYRCSMGTGCPVRKQVQRCAEDQSVLITTYEGQHNHVLPLSAKAMASTTSSAASMLLSGSMPSSDGLIHPNILQSATLPFSQNLATLSTSAPFPTITLDLTQSATTNSSQGAPQKFLDQTKLFNLHGYQGTKTASFMDMVNAATSAITSDPKFSVALMAAITSIIGSSHSNNINGASGDPTFQ 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01119 466 SUPERFAMILY WRKY DNA-binding domain 254 321 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca09g01119 466 Pfam WRKY DNA -binding domain 263 319 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g01119 466 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 21 456 IPR044810 GO:0003700
Cca09g01119 466 SMART WRKY_cls 261 321 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g01119 466 Coils Coil 103 137 - -
Cca09g01119 466 ProSiteProfiles WRKY domain profile. 256 322 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca09g01119 466 PANTHER WRKY TRANSCRIPTION FACTOR 6-LIKE 21 456 - -
Cca09g01119 466 Gene3D WRKY domain 246 323 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01119 Cca-Chr9 32262970 32268901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01119 22 452 WRKY Transcription Factor Family AT1G62300 40.412 6.74e-90 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca09g01119 WRKY 1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01119 - - gmx:100779533 498.819