Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01117 ATGTCGGATTTGCTCCAATCGCTATCGATGCGTGCGGTCTTTGGCAACAAAGCTTTGCCATCGGCGTCAAGCGGTGCCCAAGCACAGGGTTCTGGCACCACCAAGGATCGCAAGATGCCTTTGGCAGAGCCACTTGTCCTCAAGCTTAGTGACACTGATCTTCGTGAAGATGCGCTTCTTGAACTCTCAAAGAAGAGGGAGCTGTTTCAAGATCTTGCACCATTGTTGTGGAATTCTTTTGGTACCATTGCTGCACTTTTGCAGGAAATAGTTTCAATATACCCTGTTCTTTCACCACCAAATCTTACTCCTGCACAATCAAATCGAGTGTGCAATGCTCTTGCTCTTCTTCAGTGTGTAGCATCTCACCCTGATACAAGGATGCTTTTCCTCAATGCTCATATACCTCTATATCTGTATCCATTCCTCAATACAACAAGCAAGTCAAGACCATTTGAGTACTTGAGGCTTACCAGTCTTGGTGTCATTGGTGCATTGGTGAAGGTGGATGATACAGAAGTTATAAGTTTCCTTCTTTCAACAGAGATAATTCCTCTGTGCTTGCGCACCATGGAAATGGGCAGTGAACTATCCAAAACAGTTGAGTTTACCAATTTTTTATTCTTATTCTTTGGTAAACTTGTGCCATTACATCATTTGTCTGATAAATTGAATTTAGTTTCCATTTCTTCATATTTCTTTGACCACAATTTTCTGGTTTCTGTTTCATCTACATGTATATATGCATTTTTTTTTTCTAAGTACATATGTATGTGA 777 0.408 MSDLLQSLSMRAVFGNKALPSASSGAQAQGSGTTKDRKMPLAEPLVLKLSDTDLREDALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVEFTNFLFLFFGKLVPLHHLSDKLNLVSISSYFFDHNFLVSVSSTCIYAFFFSKYICM 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01117 258 Gene3D - 34 211 IPR011989 -
Cca09g01117 258 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 9-LIKE 1 202 - -
Cca09g01117 258 SUPERFAMILY ARM repeat 47 194 IPR016024 -
Cca09g01117 258 Pfam Cell differentiation family, Rcd1-like 45 201 - -
Cca09g01117 258 PANTHER UNCHARACTERIZED 1 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01117 Cca-Chr9 32224278 32240077 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Cca09g01117 Rcd1 2e-77 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01117 K12606 - gmx:100784529 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01117 09 32224278 32240077 Cca09g01117 09 32224278 32240077 ECH