Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01108 ATGAAGAAGATGTGGATTTGGCATCATCGCTTGTTTCTTCTCTGCATTGTTTGCGGCCTCAGTTTTTCTCTTCACTTCAGAAGGGTTTCTTCAACCTCACCTGCTTCGCACACTGACCATGGTCATGTAGATTCAAATGCTGGAAGAACTTTGAATCAGGAAGGTGGTGATCATCAAATACATTGTTCTAGAGAAAGAAGTAGGGCAGCTTGGAAGATCATTCAAGAGTATTTGATGCCCTTTGTGGAGAAAGAAAAATATCATATCTCAAAAAGGTGTAGGATTCACCCTGACAATGACATTTACAGAGATCAGGAGCAACATAAGTTTCATATAGACATAAATGAATGGCAGTGTGGGTACTGTAAGAAAAGTTTCTATGAAGAGAAACATCTTGATCAGCATTTTGACAACAGACACTCCAATTTGCTTAATTTGAGTGAAAGCCAGTGCTTAGCAGACGTATGTGGTGCACTGCACTGTGACCATGAAATCAATTCCGGGTCAAAAAAATCAAAGTGCAATCCTGCTGCTGCTGCAAGAAATAAACTTCTATGTGAGAGCTTAGCCAATGATTGTTTTCCGATCAATGAGGGACCTACGGCAAGCCGACTTCATGAATTCTTCCTGCACCAATTCTGTGATGCACACAGCTGTGCTGGAAGGAGGAAGCCTTTCTCCAGAGGGCGCAGGAATAAGACAAATGTGTTCTACATCGTCGTGTCTATTTTGCTTGTGATACTGCTGCTACTATACTATCTCTACATTTACTTATATCAGAGAGGAATGAAAAGGGAAACTCAAATGCTGAAGCGCATCTCACAAGCCAGCAGAAAGAAAAAGCCATCCTAA 852 0.4131 MKKMWIWHHRLFLLCIVCGLSFSLHFRRVSSTSPASHTDHGHVDSNAGRTLNQEGGDHQIHCSRERSRAAWKIIQEYLMPFVEKEKYHISKRCRIHPDNDIYRDQEQHKFHIDINEWQCGYCKKSFYEEKHLDQHFDNRHSNLLNLSESQCLADVCGALHCDHEINSGSKKSKCNPAAAARNKLLCESLANDCFPINEGPTASRLHEFFLHQFCDAHSCAGRRKPFSRGRRNKTNVFYIVVSILLVILLLLYYLYIYLYQRGMKRETQMLKRISQASRKKKPS 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01108 283 ProSiteProfiles Zinc finger C2H2 type domain profile. 117 142 IPR013087 -
Cca09g01108 283 MobiDBLite consensus disorder prediction 33 56 - -
Cca09g01108 283 PANTHER ZINC FINGER PROTEIN-RELATED 18 283 - -
Cca09g01108 283 ProSitePatterns Zinc finger C2H2 type domain signature. 119 140 IPR013087 -
Cca09g01108 283 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 18 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01108 Cca-Chr9 32118295 32123299 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01108 41 283 C2H2 Transcription Factor Family AT5G63280 58.943 7.93e-106 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca09g01108 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01108 - - gmx:100527694 489.574