Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01100 ATGGAGGGTATGTCAAGCGCAAATGATCATGCAACCAATGGTGAAAGTGGGTTGCTAACAATGTTTGGTGGCAATggtggcggtggcagtgacaacggtggcggcggtgagggtggtggCAATGCTGAGGAGATGACTCTGAAGAAGGGTCCTTGGACAACCGCTGAGGATGCTATTCTCATAGATTATGTGACAAAGCATGGTGAAGGGAATTGGAATGCATTGCAAAGGAACACAGGGTTGAATAGATGTGGGAAGAGTTGTAGGCTCAGGTGGGCCAATCATTTGAGGCCCAATTTGAAGAAGGGTGCCTTCTCCCCTGAGGAAGAGAAACTCATTGTTGAACTTCATTCACAATTTGGCAACAAATGGGCTCGAATGGCTGCTTTGTTGCCTGGGAGAACCGACAATGAAATCAAGAACTATTGGAACACAAGAATCAAGCGACGCCAAAGGCAAGGTCTCCCTCTCTATTCAGATGACCATGATCACCATCGTTCCACAACACCAACCACTACCCCAATGCTCACCCCAACAGACTTAAACCCTAACAACACTAGCACAAACTATGAGTTTTTcaaccaacaccaccaataccaacaccaacaacaCCCTTTATCTCCAACTACACACCACCATTCCCCTCTAACATCACCCCTCCAACACAGACCCTTCAACTCTTCTTCCCCTCACACATTCTTAGACCGTTCACCTCTTCCACTCTCTTCCTTCACCTTCCAAAGACCAGCACCAATGTTATGCACCCCTCTTCGCTTCAAGCGCTATCGAGCCTCTCCAAATAGCTACAACTTCATCAACCCTTCTTCTTCTTCACTCCCTGATGACTCTCATGTGGCCACCCAATTCCCCCACCTTGATGGATTCAAGTTTCCTACAGTTCAAGGCTTTTCTCAATTTTTTCAACCCTCTTTGTTTGACACCGATCAAGGGGTTTCTTCTTCCTCCTCAGTTTTCCAACCCAAGTTGGAGCTCCCTTCAAACCAGTTCTATAAACCACCCCAAGAGCAAGAGCTTAAGCTTGACCTTGATTTCAATGATCCTTCCTTTCAGAGCAGTAGTGGCTTGTTGGGGGATCTTCTCTTGGAGGCTCAATCACTAGCTTCAGGCCATAACTCGAAGAAACGAGGTTACTTGAGTTTGAATGAGGGAAATGATGTGTTTGATGCATGCCAAAGCTTTGAGGACTTTCCACCCGACTCTCTTTTCTGGTCTTCCACCTCTACTTCGAATTCAGTACCAAAACTAAAGGACGAAGCACCAGACCTTAGCAAATTCACGAATGAGGACTTGTCATCATTGCTTACAGTAATTCCATCTTCCAATATGCAGGGTCATGAGTGGCACAATAATAATAGTGCCCCAGAAGGGTCCAACGTTCATTCCTCTGGTAGTGGCATGACAGATGACAACTTTGGACTTGATATCAAACCCATAGCTTCGTTGTTTCCTCTCACCAACACCACAAACCATAATGAAAACCAAGGATGCTACTCTTGGGACAATTTACCTGGTCTCTGCTAA 1542 0.4319 MEGMSSANDHATNGESGLLTMFGGNGGGGSDNGGGGEGGGNAEEMTLKKGPWTTAEDAILIDYVTKHGEGNWNALQRNTGLNRCGKSCRLRWANHLRPNLKKGAFSPEEEKLIVELHSQFGNKWARMAALLPGRTDNEIKNYWNTRIKRRQRQGLPLYSDDHDHHRSTTPTTTPMLTPTDLNPNNTSTNYEFFNQHHQYQHQQHPLSPTTHHHSPLTSPLQHRPFNSSSPHTFLDRSPLPLSSFTFQRPAPMLCTPLRFKRYRASPNSYNFINPSSSSLPDDSHVATQFPHLDGFKFPTVQGFSQFFQPSLFDTDQGVSSSSSVFQPKLELPSNQFYKPPQEQELKLDLDFNDPSFQSSSGLLGDLLLEAQSLASGHNSKKRGYLSLNEGNDVFDACQSFEDFPPDSLFWSSTSTSNSVPKLKDEAPDLSKFTNEDLSSLLTVIPSSNMQGHEWHNNNSAPEGSNVHSSGSGMTDDNFGLDIKPIASLFPLTNTTNHNENQGCYSWDNLPGLC 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01100 513 ProSiteProfiles Myb-like domain profile. 44 96 IPR001005 -
Cca09g01100 513 Pfam Myb-like DNA-binding domain 49 96 IPR001005 -
Cca09g01100 513 Pfam Myb-like DNA-binding domain 102 145 IPR001005 -
Cca09g01100 513 Gene3D - 104 170 - -
Cca09g01100 513 ProSiteProfiles Myb-like domain profile. 97 147 IPR001005 -
Cca09g01100 513 CDD SANT 51 96 IPR001005 -
Cca09g01100 513 MobiDBLite consensus disorder prediction 198 219 - -
Cca09g01100 513 Gene3D - 48 101 - -
Cca09g01100 513 MobiDBLite consensus disorder prediction 157 179 - -
Cca09g01100 513 MobiDBLite consensus disorder prediction 1 45 - -
Cca09g01100 513 CDD SANT 104 145 IPR001005 -
Cca09g01100 513 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 151 IPR017930 -
Cca09g01100 513 MobiDBLite consensus disorder prediction 1 19 - -
Cca09g01100 513 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 96 IPR017930 -
Cca09g01100 513 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 33 508 - -
Cca09g01100 513 SMART sant 101 149 IPR001005 -
Cca09g01100 513 SMART sant 48 98 IPR001005 -
Cca09g01100 513 SUPERFAMILY Homeodomain-like 46 143 IPR009057 -
Cca09g01100 513 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 33 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01100 Cca-Chr9 32012255 32016542 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01100 26 513 MYB Transcription Factor Family AT4G26930 35.510 7.46e-68 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca09g01100 Myb_DNA-binding 4.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01100 - - gmx:102659401 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01100 09 32012255 32016542 Cca09g01100 09 32012255 32016542 ECH