Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01097 ATGTTTTCCTCCTCAAAACCCCACCTCTCTCCGGTTCGCTCCATCCTCCCTCCGGTTCGCTGCGGCATCCGCGAACTCCGCCACCGAATCCAAACCGTCGACGCCACTCACAAACTCACCGAAGCCATGAAGCTCGTCGCCGCCGCCCGAGTCCGCCGCGCCCAGGAGGCCGTTGTCAGCGCCCGCCCCTTCTCCTCCAACCTCGCCGCCGTGCTCGCCGACGTCGCCCAGCGCCTCCAAGACGACGGCGTTTCCACCCCCCTCACCGCCTCCCGACCCGTCAAGACCGTCGCCCTCGTCGTCGTCACCGCCGACCGCGGCCTCTGCGGCGGTTTCAACAAATCGGTGATTAGCAAAGCCGCGACCCGAATCGAGGAGTTGAAGAAACTCGGTTTGGGGTGCGTCGTTATCAGCGTCGGCAAAAAGGGTAACTCGTTTTTCGCCCGCAATGGTAAAAACAGCGACCCTTTTGTTAAAGTTGATAGCTTTATAGAGATTGGCGGTTTTCCCACCGCGAAGGAGGCTCAGGTCATTGCTGATGATGTTTTTTCGTTGTTTGTGAGTGAGGAGGTTGATAAAGTTGAGCTTGTGTACACTAAGTTTGTGTCTCTGGTTAGGTTTGAGCCTGTGATTGGGCCTTTGTTGCCTTTTGTGAATGATGGGAATGGGAATTGTGGTGATGGGGTTTTTAGGTTGAGTACTAAGGAGGGGAAGTTGGCTTTGGAGAGGGATGTTGTGAGGTTTAGGAAAGAGGGTGAGGGGTTAGTGTTGCCCCTTATGGAGTTTGAGCAGGATCCTGTTCAGATTCTTGATGCCATGTTGCCTCTTTATTTGAATAGCCAGATTTTGAGGGGCTTGCAGGAGTCTGTGGCTAGTGAGCTTGCTGCTAGGATGGGGGCCATGGCGGCCGCCACCGATAACGCGGTGGAGTTGGGGAAGAGCCTTTCGGTTGCCTACAACCGGGAGCGGCAGGCCAAGATCACTGGAGAGTTGTTGGAGATTGTGGCTGGTGCTGAGGCACTAACAAGAAATGACTCATGA 1041 0.5552 MFSSSKPHLSPVRSILPPVRCGIRELRHRIQTVDATHKLTEAMKLVAAARVRRAQEAVVSARPFSSNLAAVLADVAQRLQDDGVSTPLTASRPVKTVALVVVTADRGLCGGFNKSVISKAATRIEELKKLGLGCVVISVGKKGNSFFARNGKNSDPFVKVDSFIEIGGFPTAKEAQVIADDVFSLFVSEEVDKVELVYTKFVSLVRFEPVIGPLLPFVNDGNGNCGDGVFRLSTKEGKLALERDVVRFRKEGEGLVLPLMEFEQDPVQILDAMLPLYLNSQILRGLQESVASELAARMGAMAAATDNAVELGKSLSVAYNRERQAKITGELLEIVAGAEALTRNDS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01097 346 ProSitePatterns ATP synthase gamma subunit signature. 327 340 IPR023632 -
Cca09g01097 346 PANTHER ATP SYNTHASE GAMMA CHAIN, CHLOROPLASTIC-LIKE 11 342 - -
Cca09g01097 346 CDD F1-ATPase_gamma 23 338 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cca09g01097 346 PRINTS ATP synthase gamma subunit signature 94 113 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cca09g01097 346 PRINTS ATP synthase gamma subunit signature 192 209 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cca09g01097 346 PRINTS ATP synthase gamma subunit signature 288 307 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cca09g01097 346 PRINTS ATP synthase gamma subunit signature 319 340 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cca09g01097 346 Hamap ATP synthase gamma chain [atpG]. 20 341 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cca09g01097 346 Pfam ATP synthase 23 341 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cca09g01097 346 Gene3D ATP synthase, gamma subunit, helix hairpin domain 250 341 - -
Cca09g01097 346 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 22 341 IPR035968 GO:0015986|GO:0045261|GO:0046933
Cca09g01097 346 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 23 341 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cca09g01097 346 Gene3D - 88 218 - -
Cca09g01097 346 PANTHER ATP SYNTHASE GAMMA CHAIN 11 342 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cca09g01097 346 Gene3D ATP synthase, gamma subunit, helix hairpin domain 22 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01097 Cca-Chr9 31992244 31994260 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01097 2 341 Primary Pumps ATPases AT1G15700 62.784 2.21e-142 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01097 K02115 - gmx:100797879 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01097 09 31992244 31994260 Cca09g01097 09 31992244 31994260 ECH