Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01094 ATGCCCTCTGCCCAGGATCCATTCTACGTTGTCAAGGCCGAGATTCAAGATTCTATTGATAAGTTGAAGTCTACTTTTCACCAATGGGAAAGCACTTCTGACGCTGCAGAACAAGGACATCTTATGAAGGAGGTTCTTGCTGGATGCGAAAGCATAGAGTGGCAGGTGGATGAATTGGATAAAGCAATTGCTGTTGCATCTAGAGATCCTTCTTGGTATGGAATTGATGAAGTGGAGCTTGAAAGCCGGAGTAGATGGACAAACAATGCTCGTACTCAGGTTGGCACAATGAAAAAAGAAGTGGAAGCCGGAAAGGGCTCAAGTACCACAAGCCATGCTAGCGTAAATGGGATGCGCCGAGAACTACTTAGGCTACCGAATTCCCATCAGACCGATACCTCCAATCAGTATGCTGCCCGAGATAATGATGACTTCATACAATCAGAATCAGATAGACAAATGCTGCTTATAAAGAAACAGGATGAGGAGTTGGATGAGCTTAGTGAAAGTGTACGAAGAATTGGAGGTGTTGGACTTACAATACATGATGAACTCCTTGCACAGGAAAAGATTATAGATGAACTCGGTTCTGAGATGGACAGTACAACAAATCGTCTTGATTTTGTCCAAAAAAAGGTAGGAATGGTTATGAAGAAGGCTAGTGCAAAGGGTCAAATCATGATGATATTGGGTTTGTTGGCCCTATTTATCTTCCTCTTTATCTTGGTATTCTTCACCTAG 741 0.4278 MPSAQDPFYVVKAEIQDSIDKLKSTFHQWESTSDAAEQGHLMKEVLAGCESIEWQVDELDKAIAVASRDPSWYGIDEVELESRSRWTNNARTQVGTMKKEVEAGKGSSTTSHASVNGMRRELLRLPNSHQTDTSNQYAARDNDDFIQSESDRQMLLIKKQDEELDELSESVRRIGGVGLTIHDELLAQEKIIDELGSEMDSTTNRLDFVQKKVGMVMKKASAKGQIMMILGLLALFIFLFILVFFT 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01094 246 PANTHER SYNTAXIN 1 245 IPR045242 -
Cca09g01094 246 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 154 216 IPR000727 -
Cca09g01094 246 Gene3D - 2 104 - -
Cca09g01094 246 SUPERFAMILY t-snare proteins 5 102 IPR010989 GO:0016020|GO:0016192
Cca09g01094 246 PANTHER SYNTAXIN PROTEIN 1 245 - -
Cca09g01094 246 Pfam SNARE domain 191 242 IPR000727 -
Cca09g01094 246 ProSitePatterns Syntaxin / epimorphin family signature. 160 199 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cca09g01094 246 CDD SNARE_Qc 157 213 - -
Cca09g01094 246 SMART tSNARE_6 149 216 IPR000727 -
Cca09g01094 246 Coils Coil 192 212 - -
Cca09g01094 246 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Cca09g01094 246 SUPERFAMILY SNARE fusion complex 152 216 - -
Cca09g01094 246 Gene3D - 161 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01094 Cca-Chr9 31953782 31963290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01094 55 246 SNARE and Associated Proteins AT1G28490 71.875 1.79e-96 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01094 K08500 - gmx:100790368 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01094 09 31953782 31963290 Cca05g01936 05 39157016 39160711 PCT