Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01090 ATGGGCTGTTTTCTAAGTAAAGATTCAGAGCCAGAACAGAATGGTTACAGACATGCTGGGTCTGGTGGTGTACACAACCAGAAGACTCATCATGAACCATTGGTCAACCAATCAAGGGTACCTGCAAATCAACCTTATCATTCATCTGAAAAGCCCCATCATGCTGCATCCACTGCCCAGACAGTGCCTCAGATGCCATGGAAGCCTTCTGGTCCTTCCCCTAGTCCAAAACCTGTTTCTGGTGTTAAGCAAGACACAATTCTTGGGAAGAAGTTTGAGGATGTAAAGCAGTTCTACACACTTGGGAAGGAATTGGGTAGAGGGCAATTTGGAGTGACATATCTTTGCACTGAGAATTCAACTGGGTTGCAGTATGCCTGCAAGTCCATTTCCAAGAGAAAACTTGTGAGCAAATCAGATAAGGAGGATATAAAGAGGGAGATTCAGATTATGCAGCATTTGAGTGGTCAACCTAACATTGTTGAGTTCAAAGGGGCTTATGAGGATAAGCACTCAGTTCATGTTGTGATGGAGCTGTGTGCAGGTGGGGAACTTTTTGACAGGATTATTGCCAAGGGGCATTACAGTGAAAGGGCTGCTGCTTCAATATGCAGACAAATTGTAAATGTTGTTCATATCTGCCATTTCATGGGTGTGATGCATAGGGATCTAAAGCCAGAGAATTTTTTGTTATCTAGTAGGGATGAAAATGCACTTCTAAAGGCTACTGATTTTGGCTTGTCCGTTTTCATTGAAGAAGGGAAGGTGTATCGGGATATAGTTGGCAGTGCTTACTATGTTGCACCTGAAGTTCTGAGGCGCAGATGTGGGAAGGAAATCGATATATGGAGTGCAGGAGTCATATTGTATATCTTACTTAGTGGAGTCCCTCCATTTTGGGCTGAGACTGAGAAGGGAATATTTGATGCCATATTGGAAGGTCACATTGATTTTGAAAGTCAACCATGGCCTAACATTTCAAAAAGTGCCAAGGATCTTGTTCGTAGCATGCTTATACAGGATCCAAAGAAACGCATTACCGCTGCTCAAGTTCTTGAGCACCCATGGATTAAAGATGGTAATGCTCCAGACAAGCCAATAAACAGTGCAGTACTTTCCAGAATGAAGCAATTTAGAGCAATGAATAAACTAAAGAAACTTGCCTTGAAGGTCATAGCTGAGAATATGTCTGCAGAAGAGATCCAAGGTTTGAAGGCAATGTTTACAAATATGGACACTGACAAGAGTGGTACCATCACCTATGAAGAACTAAAGGCAGGATTGCAAAGACTTGGCTCAAAGCTTACAGAGGCTGAAGTGAAACAGCTTATGGAAGCTGCTGATGTAGATGGAAATGGCTCAATTGACTACATAGAATTCATCACTGCCACAATGCATAGACACAAGTTAGAAAGAGATGACCAACTTTTCAAGGCATTCCAATATTTTGATAAAGACAATAGTGGGTTTATTACAAGAGATGAATTGGAAACAGCCATGAAAGAATATGGTATGGGTGATGATGCCACAATCAAGGAAATCATATCTGAAGTTGATACAATTATATCTGAAGTGGATACAGATCATGATGGTAGAATCAACTATGAAGAATTTTGTGCAATGATGAAGAGTGGAAACCAACACCAAGGCAAGCTATTCTAA 1662 0.4128 MGCFLSKDSEPEQNGYRHAGSGGVHNQKTHHEPLVNQSRVPANQPYHSSEKPHHAASTAQTVPQMPWKPSGPSPSPKPVSGVKQDTILGKKFEDVKQFYTLGKELGRGQFGVTYLCTENSTGLQYACKSISKRKLVSKSDKEDIKREIQIMQHLSGQPNIVEFKGAYEDKHSVHVVMELCAGGELFDRIIAKGHYSERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSRDENALLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRRCGKEIDIWSAGVILYILLSGVPPFWAETEKGIFDAILEGHIDFESQPWPNISKSAKDLVRSMLIQDPKKRITAAQVLEHPWIKDGNAPDKPINSAVLSRMKQFRAMNKLKKLALKVIAENMSAEEIQGLKAMFTNMDTDKSGTITYEELKAGLQRLGSKLTEAEVKQLMEAADVDGNGSIDYIEFITATMHRHKLERDDQLFKAFQYFDKDNSGFITRDELETAMKEYGMGDDATIKEIISEVDTIISEVDTDHDGRINYEEFCAMMKSGNQHQGKLF 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01090 553 Gene3D Phosphorylase Kinase; domain 1 101 184 - -
Cca09g01090 553 Gene3D Transferase(Phosphotransferase) domain 1 185 364 - -
Cca09g01090 553 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-RELATED 56 547 - -
Cca09g01090 553 ProSitePatterns EF-hand calcium-binding domain. 448 460 IPR018247 -
Cca09g01090 553 SMART efh_1 517 545 IPR002048 GO:0005509
Cca09g01090 553 SMART efh_1 403 431 IPR002048 GO:0005509
Cca09g01090 553 SMART efh_1 475 503 IPR002048 GO:0005509
Cca09g01090 553 SMART efh_1 439 467 IPR002048 GO:0005509
Cca09g01090 553 MobiDBLite consensus disorder prediction 1 82 - -
Cca09g01090 553 ProSiteProfiles EF-hand calcium-binding domain profile. 513 548 IPR002048 GO:0005509
Cca09g01090 553 Pfam Protein kinase domain 99 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01090 553 MobiDBLite consensus disorder prediction 30 66 - -
Cca09g01090 553 ProSitePatterns EF-hand calcium-binding domain. 484 496 IPR018247 -
Cca09g01090 553 ProSiteProfiles EF-hand calcium-binding domain profile. 399 434 IPR002048 GO:0005509
Cca09g01090 553 ProSiteProfiles Protein kinase domain profile. 99 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01090 553 ProSitePatterns EF-hand calcium-binding domain. 526 538 IPR018247 -
Cca09g01090 553 CDD EFh 404 463 IPR002048 GO:0005509
Cca09g01090 553 Gene3D - 365 549 - -
Cca09g01090 553 ProSiteProfiles EF-hand calcium-binding domain profile. 435 470 IPR002048 GO:0005509
Cca09g01090 553 ProSitePatterns EF-hand calcium-binding domain. 412 424 IPR018247 -
Cca09g01090 553 SUPERFAMILY EF-hand 380 544 IPR011992 -
Cca09g01090 553 ProSitePatterns Protein kinases ATP-binding region signature. 105 128 IPR017441 GO:0005524
Cca09g01090 553 SUPERFAMILY Protein kinase-like (PK-like) 98 376 IPR011009 -
Cca09g01090 553 CDD EFh 475 543 IPR002048 GO:0005509
Cca09g01090 553 Coils Coil 421 441 - -
Cca09g01090 553 ProSiteProfiles EF-hand calcium-binding domain profile. 471 506 IPR002048 GO:0005509
Cca09g01090 553 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Cca09g01090 553 SMART serkin_6 99 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01090 553 CDD STKc_CAMK 98 356 - -
Cca09g01090 553 Pfam EF-hand domain pair 474 543 IPR002048 GO:0005509
Cca09g01090 553 Pfam EF-hand domain pair 404 464 IPR002048 GO:0005509
Cca09g01090 553 PANTHER SERINE/THREONINE-PROTEIN KINASE 56 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01090 Cca-Chr9 31924304 31930024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01090 78 553 EF-hand Containing Proteins AT3G20410 81.211 0.0 818
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Cca09g01090 Pkinase 3e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01090 K13412 - gmx:547888 1028.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01933 05 39142934 39147801 Cca09g01090 09 31924304 31930024 ECH
Cca09g01090 09 31924304 31930024 Cca09g01090 09 31924304 31930024 ECH