Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01089 ATGGCCAAGTGGTTTTCTGAGACACTGAAAGCAACAAGGTGTAAGGAAGTTTTATCTATGTGGATTTTGGCTGGCAGTGGCGGTTATGCAATTGATCTTTTCATGAGAGTTGTAGAGAGAATTGTTTTTGCTCAAATTACTTGCTTTCTGGCACTAGGAGGGTCTATAATGGGGATAATTTCAGGAGCCATCAAAGGCCATACAACAGAAGCTGGTTTTCTTGATGGGGCTTGCAAAGGAGCTGTCACAGGGGCCATTGCAGCACTAGAATTGCTAAATTTTGCTGCTGATGATGAGCCACTGTCTAAGATTGCCCTATTGAGGAGTTTATTAAATGGAAAGCTATTTATGGAATGGATATGTCCAGCTGTTGCACGAGCCTATCAATGTCATATCAATGCACATGCAACAACTTATAGAGAAGACTCAGACATTTATAATGACATTGTCAGAGGAATCACAGCAAAAGGGATGGCTTGGAATATCATTCAAAAGCTTCCTGTTCAACAATTCAGTTCCTGTAAGATGTTGAAATCATACAATGAACCATGCTGCTCAATTTGCTTGCAGGATTTTGAGGATGAAGAATTTGTGAAGAAACTTCCAAAATGTGGCCACTATTTTCACTTAGCCTGCATAGACAAATGGCTAGTCCAACAAGGATCATGCCCCATGTGTAGGATTTatgttccacatttatga 702 0.396 MAKWFSETLKATRCKEVLSMWILAGSGGYAIDLFMRVVERIVFAQITCFLALGGSIMGIISGAIKGHTTEAGFLDGACKGAVTGAIAALELLNFAADDEPLSKIALLRSLLNGKLFMEWICPAVARAYQCHINAHATTYREDSDIYNDIVRGITAKGMAWNIIQKLPVQQFSSCKMLKSYNEPCCSICLQDFEDEEFVKKLPKCGHYFHLACIDKWLVQQGSCPMCRIYVPHL 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01089 233 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 6 230 IPR044523 -
Cca09g01089 233 ProSiteProfiles Zinc finger RING-type profile. 185 227 IPR001841 -
Cca09g01089 233 CDD RING-H2_PA-TM-RING 184 227 - -
Cca09g01089 233 Pfam Ring finger domain 185 227 IPR001841 -
Cca09g01089 233 SUPERFAMILY RING/U-box 162 231 - -
Cca09g01089 233 SMART ring_2 185 226 IPR001841 -
Cca09g01089 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 232 IPR013083 -
Cca09g01089 233 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01089 Cca-Chr9 31906404 31908631 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01089 44 230 C3H Transcription Factor Family AT5G66070 36.224 8.52e-38 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01089 - K19041 gmx:100799697 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01089 09 31906404 31908631 Cca09g01089 09 31906404 31908631 ECH