Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01054 ATGAGTTGTTTTCCTTGTTGTACATCACAACAGAAGCTCAATAGAAAGTCATTGAAGAAAAGCATTAAGGAATACCGAGAAGAGAAAAATCTAGCCTCATTTGCCAACATTTCTTTTAAAACAGATGGTGAAAATAAAAGATTCATAACAGAAGAGATAGCAAAGTTTGGGAAAGGCAACATTACCTCTAAGGTTTTTTCATACCGTGAGCTATGTGTTGCAACACAAAATTTTCACCCTTCCAATATGATTGGTGAAGGAGGTTTTGGGAGGGTTTACAAAGGACACCTTAAAGCAACAAATCAAGTTGTTGCTGTGAAGCAACTTGACAGGAATGGATTTCAAGGAAACAGGGAATTTCTTGTAGAGGTTTTGATTTTGAGTCTTTTGCACCACCCTAACCTTGTCAACTTGGTAGGGTATTGTGCTGAAGGTGAACAAAGAATTTTGGTATATGAATACATGGCCAATGGTTCTTTAGAAGATCACTTACTTGAATTAACTCCAGATACAAAGCCTTTGGACTGGCAAACCAGAATGAAAATTGCAGAAGGTGCAGCAAAAGGGCTTGAATACTTGCATGAAGAAGCAGACCCTCcagttatataccgcgatttcaaggcatcaaacatacttttagatgaaaacttcaatccaaagctctctgattttggacttgcaaagcttggtccaacaggagatagaacacatgtatccaccagagtgatgggaacatatggctattgtgctcctgagtatgcatcaacagggcaattgactacaaaatcagatgtgtacagctttggagtggtgtttttggagatGATCACAGGAAGAAGAGTAATTGACTATTCAAAACCATCACAAGAGCAAAATTTAGTCATTTGGGCACAACCACTTCTAAGAGATAGAAGGAAATTTGTACAAATGGCAGATCCAGTGCTAGAAGAGAACTACCCGGTAAAGGGTCTATACCAAGCACTAGCAGTAGCAGCAATGTGTCTCCAAGAGGAAGCTGATACCCGACCTTTGATCAGTGATGTAGTCACAGCCATTGAGTTTTTAGCAAGGAAGAAAGTAGAAGTGGATGAACCACTATCTACAAAAGTGACTCCTCCTCAGAGTGGAGATATTAGCCGTGAACATAATAAATCTAATGACTGTGACAACAACGACCataataacaaagacaaccataatgacaacgaatataataataacaataatgacgatgaaaagaaggagaaggagaaggataagaaAgatgaagatgatgatgatgatgatgatgatgatgAAACTGATGTGGCAACTGCCCCGACGACGAGGACCACGGCCAAAGCGCGCGCGAGTGGAAACCAGCCAGCCCCACAAGGTGGTGGGGCGGGGCCGATTGCCCAGCCCAGGAAGGGCGGCAAGGGGGGTTCGTCTcgtccctag 1440 0.3222 MSCFPCCTSQQKLNRKSLKKSIKEYREEKNLASFANISFKTDGENKRFITEEIAKFGKGNITSKVFSYRELCVATQNFHPSNMIGEGGFGRVYKGHLKATNQVVAVKQLDRNGFQGNREFLVEVLILSLLHHPNLVNLVGYCAEGEQRILVYEYMANGSLEDHLLELTPDTKPLDWQTRMKIAEGAAKGLEYLHEEADPPVIYRDFKASNILLDENFNPKLSDFGLAKLGPTGDRTHVSTRVMGTYGYCAPEYASTGQLTTKSDVYSFGVVFLEMITGRRVIDYSKPSQEQNLVIWAQPLLRDRRKFVQMADPVLEENYPVKGLYQALAVAAMCLQEEADTRPLISDVVTAIEFLARKKVEVDEPLSTKVTPPQSGDISREHNKSNDCDNNDHNNKDNHNDNEYNNNNNDDEKKEKEKDKKDEDDDDDDDDDETDVATAPTTRTTAKARASGNQPAPQGGGAGPIAQPRKGGKGGSSRP 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01054 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Cca09g01054 479 Coils Coil 8 28 - -
Cca09g01054 479 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Cca09g01054 479 Gene3D Transferase(Phosphotransferase) domain 1 155 370 - -
Cca09g01054 479 PANTHER OS07G0668900 PROTEIN 1 371 - -
Cca09g01054 479 SUPERFAMILY Protein kinase-like (PK-like) 64 373 IPR011009 -
Cca09g01054 479 CDD STKc_IRAK 84 353 - -
Cca09g01054 479 Gene3D Phosphorylase Kinase; domain 1 50 154 - -
Cca09g01054 479 ProSiteProfiles Protein kinase domain profile. 78 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01054 479 MobiDBLite consensus disorder prediction 380 421 - -
Cca09g01054 479 Pfam Protein kinase domain 79 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g01054 479 MobiDBLite consensus disorder prediction 438 452 - -
Cca09g01054 479 PANTHER RECEPTOR SERINE/THREONINE KINASE 1 371 - -
Cca09g01054 479 MobiDBLite consensus disorder prediction 366 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01054 Cca-Chr9 31136621 31148075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01054 1 356 Glycoside Hydrolase AT3G07070 63.158 1.50e-162 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Cca09g01054 Pkinase 7.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01054 - - gmx:100790474 671.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01913 05 38963402 38967289 Cca09g01054 09 31136621 31148075 ECH
Cca09g01054 09 31136621 31148075 Cca09g01054 09 31136621 31148075 ECH
Cca09g01054 09 31136621 31148075 Cca05g01913 05 38963402 38967289 PCT