Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01051 ATGTCGCCGAGCTTCGTCTTCGACCCTCCCAGCGACGAAGAAATCGAACTCTCCGAACACGAAGAAGACGAAGACGAAGACGAAGCTGATTCAGGATCAGAATCAGAATCagaagaagaagaagaagaagaagaagaagaGGGGAACACAGAAGCGCGGGTTTCGAAGAAGAAAACACAGTCTCCATGGGACTTCGCCAAATACACAGAGTCAGTGGCCGAGGAACACGCTCGCAGGAGCACCACCTCGGTCGACGAGAAAATCTCCAAAGCACTGAAACAACGTTCCGCGCCGCTCCTTGCTGCGCCCGACCACAGCTCTGACTCCGAGCCTGATGAACGGgaagattatagactggaggaagaagatgaagaagacggtaatgatgatgatAACAAGTCCTTTTTTGCTCCTTCTGAAGGAACCTCCTTCCATGCTGATTCCTTCTTGCAGCTCAATTTGTCTCGCCCTTTGCTCCGGGCTTGTGAGGCCTTGGGGTATGCTAAACCTACGCCAATTCAGGCAGCATGTATTCCACTAGCGTTGACTGGTCGTGATATATGTGGAAGTGCCATTACTGGGTCAGGGAAGACAGCTGCATTTGCACTACCTACTCTAGAGAGGTTGTTGTTCCGTCCAAAGCGCATGCGTGCAATAAGGGTCCTCATTCTTACTCCAACCAGAGAGTTGGCAGTCCAAGTTCACAGTATGATAGAGAAGCTTGCTCAGTTTACTGATATAAGGTGTTGCCTGGTTGTTGGGGGTTTGTCAACAAAGGTGCAAGAGGCTGCTTTGAGATCAATGCCAGACATTGTTGTAGCTACTCCAGGACGCATGATAGACCATTTACGCAATTCCATGTCTGTGGATTTGGATGATCTTGCTGTTCTAATCCTTGATGAGGCAGATCGTCTTTTGGAGCTTGGATTTAATGCTGAAATTCAAGAACTCGTTCGCTTGTGTCCTAAAAAAAGGCAGACTATGCTGTTTTCAGCAACAATGACCGAGGAGGTTGATGAACTTATTAAACTTTCCCTGTCAAAGCCCTTGCGTCTTTCTGCTGACCCTTCTACAAAACGGCCAGCAACATTGACTGAGGAGGTTGTTAGAATAAGAAGAATGCGGGAAGTAAATCAAGAAGCAGTTCTTCTTGCAATGTGCACCAAGACTTTTACATCCAAAGTCATAATCTTCAGTGGAACCAAGCAAGCTGCGCATAGGTTGAAAATTATATTTGGATTATCTGGCTTAAAAGCTGCTGAGCTTCATGGAAATCTTACTCAAGCCCAGCGTCTTGAAGCTTTGGAACAGTTCAGGAAGCAGCAAGTGGATTTTTTGGTCGCAACAGATGTGGCTGCCCGTGCAAAGAGGGCTGGTTCAAAGCTGAAAAGCTGCATTGTTGCTCGCATTGTTGCTGAGCAATCTATACTCAAGTGGTCTAATATAATTGAGCAAATGGAGGATCAAATTGCTGAAGTACTTCAAGAAGAGAGAGAAGAAATGGCCCTAAGGAAAGCTGAAATGGAAGCCACAAAGGCTGAAAACATGATTGCACATAAGGATGAGATCTTTTCCCGTCCCAAAAGAACCTGGTTTGTCACAGAAAAGGAGAAAAAGCTTGCTGCAAAAGCAGCCAAGGCATCCATGGATAAGAACAAAAGTTCTGGGAGAGAGGTAATTAGTGCTGAACAAGCTGAAGACCTCAGAATGAAGGAAAAGAGGAAGCGAGAGCGAGAGAAAAATTTACCTAGAAAGAAGCGTAGAAAATTGGAAGCAGCTAGAGAGATGTTGGAGGACGAGGAGCAAGATGACAAACAAGTAGAGGCTAAGGGGGAAAATAAAAAAGAAAAGGGTGGAATGTCACTTGTTGATCTTGCTTACCGACGGGCAAAGGCAGTGAAGGCTGTCAAGAAGGCATTAGATTCTGGCAAAATTGTGCAGAAGAATAAAAAGAAATCTAATAATGCTCCGCGCAAAACTTCTTCAAGGACAGAAGAGATGCGGGAGCTATTCCAGACTGATATGAAGGATAAAAAGACAAAAAGAAGAGGTGTTGGGGGAGGAAAGAAGTCAAAGAGTTCATTCAAAAGCAAGTCAAGGTACAAGCGAAAGTAG 2115 0.4383 MSPSFVFDPPSDEEIELSEHEEDEDEDEADSGSESESEEEEEEEEEEGNTEARVSKKKTQSPWDFAKYTESVAEEHARRSTTSVDEKISKALKQRSAPLLAAPDHSSDSEPDEREDYRLEEEDEEDGNDDDNKSFFAPSEGTSFHADSFLQLNLSRPLLRACEALGYAKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLFRPKRMRAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEAALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFNAEIQELVRLCPKKRQTMLFSATMTEEVDELIKLSLSKPLRLSADPSTKRPATLTEEVVRIRRMREVNQEAVLLAMCTKTFTSKVIIFSGTKQAAHRLKIIFGLSGLKAAELHGNLTQAQRLEALEQFRKQQVDFLVATDVAARAKRAGSKLKSCIVARIVAEQSILKWSNIIEQMEDQIAEVLQEEREEMALRKAEMEATKAENMIAHKDEIFSRPKRTWFVTEKEKKLAAKAAKASMDKNKSSGREVISAEQAEDLRMKEKRKREREKNLPRKKRRKLEAAREMLEDEEQDDKQVEAKGENKKEKGGMSLVDLAYRRAKAVKAVKKALDSGKIVQKNKKKSNNAPRKTSSRTEEMRELFQTDMKDKKTKRRGVGGGKKSKSSFKSKSRYKRK 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01051 704 Coils Coil 476 516 - -
Cca09g01051 704 MobiDBLite consensus disorder prediction 658 681 - -
Cca09g01051 704 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 352 IPR027417 -
Cca09g01051 704 PANTHER BNAA01G17110D PROTEIN 471 662 - -
Cca09g01051 704 MobiDBLite consensus disorder prediction 682 704 - -
Cca09g01051 704 PANTHER RNA HELICASE 471 662 - -
Cca09g01051 704 SMART ultradead3 166 367 IPR014001 -
Cca09g01051 704 MobiDBLite consensus disorder prediction 12 48 - -
Cca09g01051 704 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 178 352 IPR014001 -
Cca09g01051 704 MobiDBLite consensus disorder prediction 544 577 - -
Cca09g01051 704 Pfam DEAD/DEAH box helicase 171 341 IPR011545 GO:0003676|GO:0005524
Cca09g01051 704 Coils Coil 562 582 - -
Cca09g01051 704 MobiDBLite consensus disorder prediction 69 92 - -
Cca09g01051 704 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 363 541 IPR001650 -
Cca09g01051 704 CDD DEADc_DDX27 158 353 - -
Cca09g01051 704 PANTHER RNA HELICASE 54 278 - -
Cca09g01051 704 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 298 306 IPR000629 -
Cca09g01051 704 MobiDBLite consensus disorder prediction 1 138 - -
Cca09g01051 704 Pfam Helicase conserved C-terminal domain 384 454 IPR001650 -
Cca09g01051 704 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 147 175 IPR014014 GO:0003724
Cca09g01051 704 MobiDBLite consensus disorder prediction 544 623 - -
Cca09g01051 704 Gene3D - 354 456 IPR027417 -
Cca09g01051 704 PANTHER BNAA01G17110D PROTEIN 54 278 - -
Cca09g01051 704 MobiDBLite consensus disorder prediction 584 622 - -
Cca09g01051 704 MobiDBLite consensus disorder prediction 638 704 - -
Cca09g01051 704 MobiDBLite consensus disorder prediction 114 130 - -
Cca09g01051 704 PANTHER BNAA01G17110D PROTEIN 303 454 - -
Cca09g01051 704 Coils Coil 587 617 - -
Cca09g01051 704 PANTHER RNA HELICASE 303 454 - -
Cca09g01051 704 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 290 488 IPR027417 -
Cca09g01051 704 Gene3D - 111 353 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01051 Cca-Chr9 31094882 31103782 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01051 147 455 Eukaryotic Initiation Factors Gene Family AT3G13920 31.731 1.52e-33 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01051 K13181 - gmx:100776684 979.933