Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01047 ATGCTTCTTTGCTGCGTCGTGAACAAGTTGAAGCGTGGCCAAGCAGTAGATATTCCGAAGTATGACTTTAAGGGTTACAAGAGTGATGTTTTTCCAGCAAGACGGGTAAACCCAGCGGATGTTATAATTTTGGAAGGGATCCTTGTTTTCCATGATCCACGAGTGCGGGCATTGATGAATATGAAGATATTTGTCGACACAGATGCTGATGTTCGTCTGGCTAGAAGAATTAAGCGTGATACTGCTGACAATGCTCGTGATATTGGAACTGTGCTAGATCAGTATTCTAAATATGTGAAGCCGGCTTTTGACGACTTTATTCTTCCCACCAAGAAATATGCTGATATCATTATACCCCGTGGAGGAGATAATCACGTGGCAATTGATTTGATTGTACAGCATATTCGCACGAAGCTTGGTCAACATGACTTGTGTAAAATATATCCTAACTTATATGTCATTCAATCTACTTTTCAGATACGGGGTATGCATACCCTGGTACGTGATTCTCAAACAACGAAACATGACTTTGTATTTTATTCAGACCGTTTAATTCGTTTGGTTGTAGAACACGGCCTAGGGCATCTTCCATTTACAGAAAAGCAAGTAACCACTTCAACTGACATTTCACTGGGAAGTGTTGTGGATGATGTGCATGGATTGGTGGGTAACTCTGATTTCTAA 684 0.4079 MLLCCVVNKLKRGQAVDIPKYDFKGYKSDVFPARRVNPADVIILEGILVFHDPRVRALMNMKIFVDTDADVRLARRIKRDTADNARDIGTVLDQYSKYVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLVRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVTTSTDISLGSVVDDVHGLVGNSDF 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01047 227 Gene3D - 2 141 IPR027417 -
Cca09g01047 227 CDD UMPK 9 138 IPR000764 -
Cca09g01047 227 Gene3D - 142 221 IPR029057 -
Cca09g01047 227 PRINTS Uridine kinase signature 106 119 - -
Cca09g01047 227 PRINTS Uridine kinase signature 13 28 - -
Cca09g01047 227 PRINTS Uridine kinase signature 70 80 - -
Cca09g01047 227 PRINTS Uridine kinase signature 84 95 - -
Cca09g01047 227 PANTHER URIDINE KINASE 3 224 - -
Cca09g01047 227 SUPERFAMILY PRTase-like 141 216 IPR029057 -
Cca09g01047 227 Pfam Phosphoribulokinase / Uridine kinase family 3 126 IPR006083 GO:0005524|GO:0016301
Cca09g01047 227 PANTHER URIDINE KINASE 3 224 - -
Cca09g01047 227 Pfam Uracil phosphoribosyltransferase 156 208 - -
Cca09g01047 227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 131 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01047 Cca-Chr9 31050847 31052721 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01047 3 225 PRT Gene Family AT1G55810 82.063 2.89e-129 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01047 K00876 - gmx:100798205 391.349