Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01041 ATGAGCACCATCATGTACCAATCCGACATGCGTGCTCGAGACCCTGTTGGTGGCTGCTACAAGCTCATTCAGCACTTGCAGTCTCAGATTGAATACGCCAATGCCGAGCTTCACCTTGTTCTTCAGCATCTCGCTTTCTTTAGGGCACAGGCACATCAAAATAATGACATCTCCAATGTCACTTCTTCTCAGCCTTTCCTTCAACAAATGTCTcaagaacaacatcaacaataccaacaacaacaacaacaattcgaacagcagcagcagcagcaacaattcaaacaacaacaaTATGTTAATTACAATCCTTCCTTACAGAAAGACATAAACTTGTGGGCAGTTCAGAACTCGATATCTCTGTTGCCCTTATCGTTAGAAGATGACATCAACCAAGATCCTGTTGTTGATTATGATTATGATCAAAAGCCTGTTCTTGAATTGATGAATAAAATAGAATCAGATGCAACCGTTCATCCACATCATGGTGATGATGAAGCGGTTCTATTTAAGGTAGACAAAGCAGTGTTGTAA 534 0.3502 MSTIMYQSDMRARDPVGGCYKLIQHLQSQIEYANAELHLVLQHLAFFRAQAHQNNDISNVTSSQPFLQQMSQEQHQQYQQQQQQFEQQQQQQQFKQQQYVNYNPSLQKDINLWAVQNSISLLPLSLEDDINQDPVVDYDYDQKPVLELMNKIESDATVHPHHGDDEAVLFKVDKAVL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01041 177 Pfam Lateral organ boundaries (LOB) domain 1 40 IPR004883 -
Cca09g01041 177 Coils Coil 68 98 - -
Cca09g01041 177 ProSiteProfiles LOB domain profile. 1 44 IPR004883 -
Cca09g01041 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 155 - -
Cca09g01041 177 PANTHER LOB DOMAIN PROTEIN 1 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01041 Cca-Chr9 30976610 30977143 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01041 1 53 AS2 family AT3G13850 64.151 2.53e-16 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca09g01041 LOB 7.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01041 - - ccaj:114916407 273.863