Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01037 ATGATTTCTTCGTTGAGACAACCTGTTATAGGGATCACTGGCTCTGATCTTGTTTTGAGGCAAAGACATGCCACCCCAATTAAGGCAAGGGCGTTTTTACCTTCTCTGTCAAGAGAAAAGACTCAAAGATCTCTGGTTTCAGTGCAAAAGCCACTGCACATTGTTTCTCTTGGTGTTGGGAATTTTGTGCCAGTGAAGGATGATGAAAGGGGTGATTTGGTGAAGTGTGGAGCCTATGAGGCTGACAGATCAGAGGTTGAGGCTGCAAGCACACCATCAGAGGCTGCAAAGAAGGTGAAAATTGGGATATATTTTGCAACCTGGTGGGCTCTGAATGTGGTGTTCAATATTTATAACAAGAAGGTTTTGAATGCCTACCCTTACCCTTGGCTGACTTCAACTCTCTCACTTGCCTGTGGCTCTCTCATGATGTTGATCTCTTGGGCCACTAGGATTGCAGAAGCACCCAAGACGGATCTTGAGTTTTGGAAGTCTTTGTTCCCTGTTGCTGTTGCACATACAATAGGACATGTAGCGGCAACTGTTAGTATGTCTAAAGTTGCAGTATCATTTACACATATTATCAAGAGTGGTGAGCCTGCTTTCAGTGTCCTGGTTTCAAGATTTATTTTGGGTGAGACCTTCCCTGTGCCAGTCTATCTGTCTTTACTTCCAATCATTGGTGGATGTGCACTTGCTGCTGTGACCGAGCTCAATTTCAATATGACTGGTTTTATGGGGGCTATGATATCAAATTTGGCATTTGTATTCCGTAATATATTTTCAAAAAAGGGCATGAAGGGAAAGTCTGTCAGTGGAATGAATTACTATGCTTGTTTATCTATTTTGTCCCTTGCAATTCTCACGCCCTTCGCAATTGCCGTGGAAGGACCACAGCTGTGGGCTGCTGGATATCAAACAGCCATCTCTCAAATTGGACCCCAATTCATATGGTGGGTAGCAGCTCAAAGTGTATTCTATCATCTGTACAATCAGGTGTCATACATGTCTCTGGATGAGATCTCTCCCTTGACATTTAGCATTGGAAACACCATGAAACGTATATCTGTCATAGTGTCTTCCATTATTATCTTCCACACACCGGTTCAACCCATCAACGCTCTTGGTGCTGCCATTGCTATCCTCGGAACCTTCTTATACTCACAGGCAAAACAATAG 1179 0.4351 MISSLRQPVIGITGSDLVLRQRHATPIKARAFLPSLSREKTQRSLVSVQKPLHIVSLGVGNFVPVKDDERGDLVKCGAYEADRSEVEAASTPSEAAKKVKIGIYFATWWALNVVFNIYNKKVLNAYPYPWLTSTLSLACGSLMMLISWATRIAEAPKTDLEFWKSLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFILGETFPVPVYLSLLPIIGGCALAAVTELNFNMTGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSILSLAILTPFAIAVEGPQLWAAGYQTAISQIGPQFIWWVAAQSVFYHLYNQVSYMSLDEISPLTFSIGNTMKRISVIVSSIIIFHTPVQPINALGAAIAILGTFLYSQAKQ 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01037 392 Pfam Triose-phosphate Transporter family 100 388 IPR004853 -
Cca09g01037 392 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 100 391 IPR004696 GO:0016021|GO:0022857|GO:0055085
Cca09g01037 392 SUPERFAMILY Multidrug resistance efflux transporter EmrE 143 235 - -
Cca09g01037 392 PANTHER GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, CHLOROPLASTIC 27 391 - -
Cca09g01037 392 PANTHER SOLUTE CARRIER FAMILY 35 27 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01037 Cca-Chr9 30922421 30925795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01037 22 392 Antiporters AT1G61800 77.309 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01037 K15283 - gmx:100801832 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01907 05 38907803 38913015 Cca09g01037 09 30922421 30925795 ECH
Cca09g01037 09 30922421 30925795 Cca09g01037 09 30922421 30925795 ECH
Cca09g01037 09 30922421 30925795 Cca05g01907 05 38907803 38913015 PCT