Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01033 ATGTTAAACATTGTTGCATCTTATTGTGTTGTTCCAAGTGAAGAAACTCCCGAGACTCGTTTAAGGTTATCAGATTACGACCAAGTGGTGCGTTTGGGTCACACACCCAATATCTATATTTACAAAGCAAAGCACAACCACAACACCACTGAGAAGATGATAAAGTCACTCAGCAAAATTTTAGTGTTCTACTATCCAATAGCTGGCAGATTGAGCTTAGCAGAAAGTGGTCGAATGGAATTGGATTGCAATGCAAAGGGAGTCACATTTCTTGAAGCTGAAACCACAAAATCAATGAGTGATTATGGAGACTTTTCACCTTCTGAATCCATCAAGGAACTCGTTCCAAAGATTGATTACACTACACAACCTATAGAGGAGCTTCCTTTGTTGTTTGTGCAACTGACAAGTGAAGAAACTCCCGAGACTCGTTTAAGGTTATCAGATTACGACCAAGTGGTGCGTTTGGGTCACACACCCAATATCTATATTTACAAAGCAAAGCACAACCACAACACCACTGAGAAGATGATAAAGTCACAGATCGgaaagattcaacaatttgagaattga 573 0.3839 MLNIVASYCVVPSEETPETRLRLSDYDQVVRLGHTPNIYIYKAKHNHNTTEKMIKSLSKILVFYYPIAGRLSLAESGRMELDCNAKGVTFLEAETTKSMSDYGDFSPSESIKELVPKIDYTTQPIEELPLLFVQLTSEETPETRLRLSDYDQVVRLGHTPNIYIYKAKHNHNTTEKMIKSQIGKIQQFEN 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01033 190 PANTHER SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE 3 137 - -
Cca09g01033 190 PANTHER SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE 138 180 - -
Cca09g01033 190 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 3 137 - -
Cca09g01033 190 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 138 180 - -
Cca09g01033 190 Gene3D - 2 139 IPR023213 -
Cca09g01033 190 Pfam Transferase family 2 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01033 Cca-Chr9 30692302 30693157 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01033 2 136 Monolignol Biosynthesis Gene Families AT5G48930 40.876 3.69e-30 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01033 K13065 - gmx:100779814 211.846