Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01030 ATGATAACCATTGTGGCTTCGTATAATGTCACTCCAAATCAACCAACTCCTAAAGATCCCTTATGGCTATCCGACAGTGACCAAGTCGGGCACCTAAGTCATGTACCCACAATCTACATTTACAAAGCAAAACACAACAACACCATCATTGAGAGGTTGAGAGACTCTCTTAGCAAGATTTTGGTGTTCTACTATCCAGTGGCTGGTAGAACGACGTTGACAGAAAGTGGTAGAATGGAAATGGATTGTAACGCAAAAGGAGTGACACTGCTTGAAGCTGAAACCACAAACACATTGGGTGATTATGGAGACTTTTCACCCTCTGAATCCACCAACAAACTTGTTCCAACCGTTGATTACCCTCAACCTATAGAGGAGCATCCCCTATTGCTGGTGCAATTAACAAAGTTCCATGGTGGTGAAGGCTTTGCCATTGGAATTGCTATTTTTCATCCTTTGGTTGATGGCACCTCCGCTATTAATTTCATCAACACATGGGCAAAGCTGGCTCGAGGAGAAATACTAGGGCATAATGAAATGCCATTTCTCAACCGAACATTACTAAAATTCCCACACCAGCCATCGACAACACGCATTGATATCCCCCAGTGGGGTTCAACGCAACAACACAAAACAGACGAAGTTACTCAAAAGAAGAGGGAGATGAGTGTTGAGGTGCTCAAACTCACATCAAGCCACGTGGAGAAGCTTAAGAAGAAGGCTAACGACCAATCTTTGAAAGAAGGGTCGAGGCCTTATAGCAGATTTGAAGTTATTTCTGCTCACATATGGAGATGCTATGAAAAGGCTCGTGAAATTGGTGAGAACCATCCAACCAGAGTTAGCTTTTCTGTTGACATTCGCAATAGGTTGATTCCACCACTCCCTCAAAACTATTTTGGGAATGCTTTGGCAAAAGCAGTGACACCTAAATGTTGTGTGGGAGATATCATATCAAGTCCGTTAATTTATGCTGCTCAAAAGATAAGGGAAGCAGTTTATGCAGTTACGGATGAGTATATAACGTCACAATTGAGTTCTGTTTTTGGGCAAGGGCATTTGGATAGCATAAGGGCCTTTTTCTCTGGACAAGGAAGCCTTATTAGTTCCCCAGATCCTAATGATCATGTCTTTATATCGACAAGTTGGATAACCATGCCAGTGTATGATGCAGATTTTGTATGA 1185 0.4236 MITIVASYNVTPNQPTPKDPLWLSDSDQVGHLSHVPTIYIYKAKHNNTIIERLRDSLSKILVFYYPVAGRTTLTESGRMEMDCNAKGVTLLEAETTNTLGDYGDFSPSESTNKLVPTVDYPQPIEEHPLLLVQLTKFHGGEGFAIGIAIFHPLVDGTSAINFINTWAKLARGEILGHNEMPFLNRTLLKFPHQPSTTRIDIPQWGSTQQHKTDEVTQKKREMSVEVLKLTSSHVEKLKKKANDQSLKEGSRPYSRFEVISAHIWRCYEKAREIGENHPTRVSFSVDIRNRLIPPLPQNYFGNALAKAVTPKCCVGDIISSPLIYAAQKIREAVYAVTDEYITSQLSSVFGQGHLDSIRAFFSGQGSLISSPDPNDHVFISTSWITMPVYDADFV 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01030 394 Gene3D - 1 203 IPR023213 -
Cca09g01030 394 Pfam Transferase family 1 393 - -
Cca09g01030 394 Gene3D - 204 394 IPR023213 -
Cca09g01030 394 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 3 393 - -
Cca09g01030 394 PANTHER SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE 3 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01030 Cca-Chr9 30658578 30659762 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01030 2 393 Monolignol Biosynthesis Gene Families AT5G48930 34.596 7.53e-69 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01030 K13065 - ccaj:109790793 795.038