Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01028 ATGATAGCCATTGTTGCTTCTTATTGTGTTGTTCCAAATGAAGAAACACCCGAGACTCGTTTATGGTTATCAGATAATGACCAAGTGGTGCGTTCGGGTCACACACCCACTATCTATATTTACAAAGCAAAGCACAGCAACAACACCACTGAGAGAATTAGGAACTCACTTGGCAACATTTTAGTGCCCTACTATCCATTAGCTGGCAGGTTGAGCCTAGCAGAAAGTGGTCGAATGGAATTGGATTGCAGTGCAAAGGGAGTCACATTTCTTGAAGCTGAAACCACAAAATCAATGAGTGATTATGGAGACTTTTCACCTTCTGAATCCATCAAGGAACTCGTTCCAAAGATTGATTACGTACACTGCTCAACCTATAGAGGAGCTTCCTTTGTTGTTTGTGCAATTGACAAGCTAACAGCGAAACAAGTGGAGAAGCTGAAGAAGAAGGCCAATGAGCAACCCGTGAAAGAAGGGTCGAGATATTATAGCAGATTTGAAGCTATCACTGCTCATATATGGAGATGTGCATCAAAGGCTCGTGAACTTGATGAGAAGCAACCAACTCTGGTTTGGTTCAATGCGGATATTCGCACTAGGCTAATTCCTCCTCTTCCTAGGAACTATTTCGGGAATGCTTTGGCGGCAACAGTGACACCAAAATGTTACGTTGGAGAAATCATGGGAAAGCCATTGAGTTATGCTGCCGAAAAAGTAAGAGAAGCAATTGAAATGCTTTCAAATGAGTACATAAGGTCACAACAAGAGATGGTGTTAGGGCAGGAAGAGTTAGATTGCATAAAGGCATTCTTCATGGGACAAGGAGAACGTAGCCTTGCTCCTTTTCAAGGGAACCCTAATATTCATGTAACAAGCTGGATGAGCATGCCAGTTTATGAAGCAGATTTTGGGTGGGGAAAGCCTATATATTTTGGTTTAGCGTATGTGGTTTCACATGATAGGGCACTTATTCTTCTGAGCCCAGAGGGCGATGGTTCTGTTATTGTGTCCATGCACTTTCAGATAGCACATATGCAACTTTTCAAGAAATTCTTCTACGAACATATATGA 1071 0.4211 MIAIVASYCVVPNEETPETRLWLSDNDQVVRSGHTPTIYIYKAKHSNNTTERIRNSLGNILVPYYPLAGRLSLAESGRMELDCSAKGVTFLEAETTKSMSDYGDFSPSESIKELVPKIDYVHCSTYRGASFVVCAIDKLTAKQVEKLKKKANEQPVKEGSRYYSRFEAITAHIWRCASKARELDEKQPTLVWFNADIRTRLIPPLPRNYFGNALAATVTPKCYVGEIMGKPLSYAAEKVREAIEMLSNEYIRSQQEMVLGQEELDCIKAFFMGQGERSLAPFQGNPNIHVTSWMSMPVYEADFGWGKPIYFGLAYVVSHDRALILLSPEGDGSVIVSMHFQIAHMQLFKKFFYEHI 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01028 356 Coils Coil 236 256 - -
Cca09g01028 356 PANTHER SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE 134 356 - -
Cca09g01028 356 PANTHER SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE 3 120 - -
Cca09g01028 356 Gene3D - 138 355 IPR023213 -
Cca09g01028 356 Pfam Transferase family 137 353 - -
Cca09g01028 356 Pfam Transferase family 2 119 - -
Cca09g01028 356 Gene3D - 2 137 IPR023213 -
Cca09g01028 356 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 134 356 - -
Cca09g01028 356 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 3 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01028 Cca-Chr9 30585977 30587330 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01028 128 354 Monolignol Biosynthesis Gene Families AT5G48930 34.802 3.35e-41 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01028 K13065 - gmx:100779814 371.318