Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01023 ATGTTAACCATTGTTGCATCTTATTGTGTTGTTCCAAATGAAGAAACTCCCGAGACTCGTTTAAGGTTATCAGATTACGACCAAGTGGTGCGTTTGGGTCACACACCCACTATCTATGTTTACAAAGCAAAGCACAACCACAACACCACCGAGAAGATGAGAAAGTCACTCAGCAAAATTTTAGTGTTCTACTATCCAATAGCTGGCAGATTGAGCTTAACAGAAAGTGGTCGAATCGAATTGGATTGCAATGCAAAGGGAGTCACATTTCTTGAAGCTGAAACCACAAAATCAATGGCCGATTATGGAGACTTTGCACCTTCTGAATCCATCAAGGAACTCGTTCCAAAGATTGATTATACTACACAACCTATAGAGGAGCTTCCTTTGTTGTTTGTGCAATTGACAAGGTTCCATGGTGGTGAAGGCTTTGCCATTGGATCGGCTAACTCTCATGTTTTGTCTGATGGGCTTGCTCATATTCGATTCATGAATTCATGGGCAAAGGTGACTCGAGGAGAGACACTAGAGCCACATGAAATGCCATCTTTGGATAGAACAGCACTCATATTCCAACGTTCACCTTCATCACCACGCTTTGATCACCCAGAGTTGAAGCCTCTTCCTCTGAAACTTGGAGCCTCCGATAATGCTGCTGAGAAAAAGAAGAAGACAAGTGCTGTGTTATTGAAGCTAACAGCGAAACAAGTGGAGAAGCTGAAGAAGAAGGCCAACGAGCAACCCGTGAAAGAAGGGTCGAGACATTATAGCAGATTTGAAGCTATCACTGCTCATATATGGAGATGTGCATCAAAGGCTCGTGAACTTGATGAGAAGCAACCAACTCTACTTAGGTTCAATGTGGATATTCGCAATAGACTAATTCCTCCTCTTCCTAGGAACTATTTTGGGAATGCTTTGGTGGCAACAGTGACACCAAAATGTTACGCTGGAGAAATTATGTCAAAACCATTGAGCTATGCTGCCCAAAAAGTAAGAGAAGCAAATGAAATGGTTTCAAATGAGTACATAAGGTCACAATCAGAGGCTGTATTAGGGCAGGAACACTTAGATTGCATAAAGGCATTCTTCATGGGACAAGGAGAACGTAGCCTTGCTCATTTTCCAGGGAATCCTAATATTCAGATAACAAGCTGGATGAACTTGCCGGTGTATGAAGCAGATTTTGGGTGGGGAAAGCCTATATATTTTGGTTTAGGGTATGTGAATTCACATGATAGGGCACTGATTCTTCTGAGCCCAGAGGGCGATGGATCTGTTATTGTGTCCATACACTTCCAGATAGCACATATGCAACTTTTCAAGAAACTCTTCTACGAGGACTACTCTAAACTCTAA 1359 0.4224 MLTIVASYCVVPNEETPETRLRLSDYDQVVRLGHTPTIYVYKAKHNHNTTEKMRKSLSKILVFYYPIAGRLSLTESGRIELDCNAKGVTFLEAETTKSMADYGDFAPSESIKELVPKIDYTTQPIEELPLLFVQLTRFHGGEGFAIGSANSHVLSDGLAHIRFMNSWAKVTRGETLEPHEMPSLDRTALIFQRSPSSPRFDHPELKPLPLKLGASDNAAEKKKKTSAVLLKLTAKQVEKLKKKANEQPVKEGSRHYSRFEAITAHIWRCASKARELDEKQPTLLRFNVDIRNRLIPPLPRNYFGNALVATVTPKCYAGEIMSKPLSYAAQKVREANEMVSNEYIRSQSEAVLGQEHLDCIKAFFMGQGERSLAHFPGNPNIQITSWMNLPVYEADFGWGKPIYFGLGYVNSHDRALILLSPEGDGSVIVSIHFQIAHMQLFKKLFYEDYSKL 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01023 452 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 3 449 - -
Cca09g01023 452 Pfam Transferase family 1 447 - -
Cca09g01023 452 Gene3D - 2 207 IPR023213 -
Cca09g01023 452 PANTHER SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE 3 449 - -
Cca09g01023 452 Gene3D - 214 448 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01023 Cca-Chr9 30467888 30469976 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01023 2 447 Monolignol Biosynthesis Gene Families AT5G48930 38.170 8.12e-97 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01023 K13065 - gmx:100779814 704.131