Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01017 ATGGAAACTGAAAAATCCAATGTTTCAAAGGCTGAAGAACTTAAACTCCTTGCCAACGAAGCATTCAATGCTCGAAAATACTCCCTAGCCATTGATCTATATACACAAGCAATTGAGCTAAACAGTCAAAGTGCAGTTTACTTGGCTAATCGTGCATTTGCCCATCTCCGGCTCGAAGAATATGGTAGTGCAATACAAGATGCCACAAAAGCTATTGAAACTGATCCTAAATATTCGAAGGGTTATTACAGGCGAGGTGCTGCTCATCTTGGGCTGGGAAAATTCAAGGATGCACTGAAAGATTTTCAGCAGGTCAAAAAAATGTGTCCAAATGATCCTGATGCAACAAAGAAATTGAAGGAATGTGAAAAAGCAGTTATGAAACTTAAATTTGAAGAAGCAATTGCTTTGCCAGAGTCTGAAAGGCGCTCAATAGCTGAATCCATAGATTTCCATACTATAGATGTCGAGCCACAATATTCAGGAGCAAGAATAGAGGGGGAAGTTGTTACTTTGGATTTTGTGAAAAAAATGATGGAAGATTTCAAGAATCAGAAGTTCTTACATAAACGGTATGCATTCCAGATTGTTTTGCAAACAAGAAAGATGTTGCAAGCTTTACCTTCTCTTGTTGACATACATGTTCCCGATGGCAAACATTTTACAGTTTGTGGTGATGTGCATGGCCAGTACTATGATCTTCTCAATATTTTTGAGCTTAATGGGCTTCCTTCAGAAGAGAATCCATATCTATTCAATGGTGACTTTGTGGATAGAGGTTCTTTTTCATTGGAAGTTATCCTCACTTTGTTTGCATTTAAGTGCATGTCTCCATCAGGCATATATTTAGCACGAGGAAATCACGAGAGCAAGAGCATGAACAAGATATATGGTTTTGAGGGCGAGGTGCGCTCGAAGTTGAATGAAACATTTGTTGAACTGTTTGCAGAAGTATTCTGCTGTTTACCATTGGCTCATGTGATAAATGAGAAAATTTTCGTAGTTCATGGAGGTCTTTTTAGTGTTGATGGGGTCAAACTCTCTGACATCCGATCAATTAATCGGTTTTGTGAGCCTCCTGAAGAAGGGTTGATGTGTGAATTATTATGGAGTGATCCACAACCTCTACCTGGAAGGGGCCCAAGCAAGCGCGGTGTAGGCCTTTCTTTCGGTGCAGATGTTACAAAAAGGTTTTTGCAGGAAAATAGTTTAGATTTAGTTGTGCGATCTCATGAAGTAAAGGATGAGGGTTACGAGATTGAACATGATGGTAAACTCATAACCGTGTTTTCTGCTCCAAATTACTGTGACCAGATGGGTAACAAAGGTGCCTTTATTCGATTTGAAGCTCCTGAAATGAAACCTAACATTGTCACATTCTCAGCAGTGCCACACCCTGATGTGAAACCAATGGCTTATGCAAACAACTTCCTCAGGATGTTCTCATAA 1449 0.3968 METEKSNVSKAEELKLLANEAFNARKYSLAIDLYTQAIELNSQSAVYLANRAFAHLRLEEYGSAIQDATKAIETDPKYSKGYYRRGAAHLGLGKFKDALKDFQQVKKMCPNDPDATKKLKECEKAVMKLKFEEAIALPESERRSIAESIDFHTIDVEPQYSGARIEGEVVTLDFVKKMMEDFKNQKFLHKRYAFQIVLQTRKMLQALPSLVDIHVPDGKHFTVCGDVHGQYYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCMSPSGIYLARGNHESKSMNKIYGFEGEVRSKLNETFVELFAEVFCCLPLAHVINEKIFVVHGGLFSVDGVKLSDIRSINRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQENSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPEMKPNIVTFSAVPHPDVKPMAYANNFLRMFS 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01017 482 Pfam Tetratricopeptide repeat 17 78 - -
Cca09g01017 482 SUPERFAMILY Metallo-dependent phosphatases 170 476 IPR029052 -
Cca09g01017 482 SMART tpr_5 79 112 IPR019734 GO:0005515
Cca09g01017 482 SMART tpr_5 11 44 IPR019734 GO:0005515
Cca09g01017 482 SMART tpr_5 45 78 IPR019734 GO:0005515
Cca09g01017 482 CDD MPP_PP5_C 160 475 IPR041753 -
Cca09g01017 482 Gene3D - 139 481 IPR029052 -
Cca09g01017 482 PIRSF PPPtase_5 1 482 - -
Cca09g01017 482 Pfam PPP5 TPR repeat region 119 212 IPR013235 -
Cca09g01017 482 PRINTS Serine/threonine phosphatase family signature 220 247 IPR006186 GO:0016787
Cca09g01017 482 PRINTS Serine/threonine phosphatase family signature 250 277 IPR006186 GO:0016787
Cca09g01017 482 PRINTS Serine/threonine phosphatase family signature 283 307 IPR006186 GO:0016787
Cca09g01017 482 PRINTS Serine/threonine phosphatase family signature 317 343 IPR006186 GO:0016787
Cca09g01017 482 PRINTS Serine/threonine phosphatase family signature 347 374 IPR006186 GO:0016787
Cca09g01017 482 PRINTS Serine/threonine phosphatase family signature 403 423 IPR006186 GO:0016787
Cca09g01017 482 PRINTS Serine/threonine phosphatase family signature 425 441 IPR006186 GO:0016787
Cca09g01017 482 PANTHER BNAC09G39960D PROTEIN 11 481 - -
Cca09g01017 482 Gene3D Tetratricopeptide repeat domain 1 138 IPR011990 GO:0005515
Cca09g01017 482 Pfam Tetratricopeptide repeat 80 112 IPR001440 GO:0005515
Cca09g01017 482 SUPERFAMILY TPR-like 6 138 IPR011990 GO:0005515
Cca09g01017 482 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Cca09g01017 482 SMART pp2a_7 188 464 IPR006186 GO:0016787
Cca09g01017 482 Pfam Calcineurin-like phosphoesterase 220 414 IPR004843 GO:0016787
Cca09g01017 482 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Cca09g01017 482 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 11 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01017 Cca-Chr9 30338174 30351063 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01017 166 404 Calmodulin-binding Proteins AT5G63870 32.746 1.51e-38 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01017 K04460 - csin:114309579 888.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01017 09 30338174 30351063 Cca09g01017 09 30338174 30351063 ECH