Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01008 ATGAGGACTGTTCTGAAGGTTGTGGATAACTCCGGGGCTAAGAAGGTGATGTGCATACAGGCATTGAAAGGGAAGAAAAGGGCAAGATTAGGTGACACAATAATAGCATCCATGAAGGAAGCACATCCTAATGGAAAAGTGAGGAAAGCGAAGGTTGCATATGGGGTAGTTGTGCTTGCAGCAATGCATAGGGGGCGTTGTGATGGCAGTGAGGTCAAGTTTGATGACAATGCTGTGGTGCTTGTTGACAAGCAAGGCCAACCTATTGGAACAAGAGTTTTTGGACCAGTGCCTCGTGAACTGAGACAAAAGAAGCATGTCAAGATTCTTACCTTGGCAGGGCATATTGCATAA 354 0.4576 MRTVLKVVDNSGAKKVMCIQALKGKKRARLGDTIIASMKEAHPNGKVRKAKVAYGVVVLAAMHRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPRELRQKKHVKILTLAGHIA 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01008 117 SMART Ribosomal_L14_2 1 117 IPR000218 GO:0003735|GO:0005840|GO:0006412
Cca09g01008 117 SUPERFAMILY Ribosomal protein L14 2 116 IPR036853 GO:0003735|GO:0005840|GO:0006412
Cca09g01008 117 TIGRFAM rplN_bact: ribosomal protein uL14 2 116 IPR005745 GO:0003735|GO:0006412|GO:0015934
Cca09g01008 117 PANTHER 50S RIBOSOMAL PROTEIN HLP, MITOCHONDRIAL-LIKE ISOFORM X1 1 117 - -
Cca09g01008 117 Hamap 50S ribosomal protein L14 [rplN]. 1 117 IPR000218 GO:0003735|GO:0005840|GO:0006412
Cca09g01008 117 ProSitePatterns Ribosomal protein L14 signature. 55 81 IPR019972 -
Cca09g01008 117 Pfam Ribosomal protein L14p/L23e 1 116 IPR000218 GO:0003735|GO:0005840|GO:0006412
Cca09g01008 117 Gene3D Ribosomal protein L14 1 117 IPR036853 GO:0003735|GO:0005840|GO:0006412
Cca09g01008 117 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 1 117 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01008 Cca-Chr9 30195365 30195718 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01008 9 100 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 33.673 5.26e-08 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01008 K02874 - gmx:100818301 215.698