Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01006 ATGCTTCCAACCATGGACCTTCCAAATCAAGCTCAAGAAGGGTCTTCTCAAAAGAAAatgggaagagggaagattgaaatcaaacggatcgagaacaccacaaataggcaagtcaccttctgcaagcgtcgcaacggtttgctgaagaaagcttatgaattatcagttctgtgtgatgctgaagttgctcttgttgtcttctcaactcgtggccgtttgtatgagtatgccaacAACAGTGTTAGGGCAACTATTGAAAGGTACAAAAAGGCATGTGCTGCTTCCTCAAACGCAGAATCCGTATCTGAAGCTAATACACAGTTTTACCAGCAAGAATCATCCAAATTGAGGAGACAAATTAGAGATATTCAGAATCTAAACAGGCATATTCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAACCTGGAGGGTAGATTGGAGAAAGGATTAAGCAGAGTTAGATCTAGAAAGCATGAAACATTGTTTGCTGATGTCGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCATAATAACTATCTGCGAGCTAAGATAGCTGAACATGAGAGAGCTCAACAACAGCAATCAAATATGATGCAAGGAACACTGTGCGAGTCTCTTCCTTCACAATCATATGACAGGAATTTTTTCCCTGTAAATCTCATTGCTTCTGATCAACAGTATTCTCGTCAAGACCAGACTGCTCTACAACTTGTCTGA 735 0.3061 MLPTMDLPNQAQEGSSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERYKKACAASSNAESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQSNMMQGTLCESLPSQSYDRNFFPVNLIASDQQYSRQDQTALQLV 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01006 244 CDD MADS_MEF2_like 21 97 IPR033896 GO:0000977|GO:0045944
Cca09g01006 244 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677|GO:0046983
Cca09g01006 244 SUPERFAMILY SRF-like 21 95 IPR036879 GO:0003677|GO:0046983
Cca09g01006 244 SMART madsneu2 20 79 IPR002100 GO:0003677|GO:0046983
Cca09g01006 244 Pfam K-box region 104 190 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca09g01006 244 Coils Coil 179 199 - -
Cca09g01006 244 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677|GO:0046983
Cca09g01006 244 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677|GO:0046983
Cca09g01006 244 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677|GO:0046983
Cca09g01006 244 MobiDBLite consensus disorder prediction 1 24 - -
Cca09g01006 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 76 IPR002100 GO:0003677|GO:0046983
Cca09g01006 244 Gene3D - 32 100 IPR036879 GO:0003677|GO:0046983
Cca09g01006 244 ProSiteProfiles K-box domain profile. 106 196 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca09g01006 244 ProSitePatterns MADS-box domain signature. 22 76 IPR002100 GO:0003677|GO:0046983
Cca09g01006 244 PANTHER MADS BOX PROTEIN 16 238 - -
Cca09g01006 244 Coils Coil 109 129 - -
Cca09g01006 244 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 16 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01006 Cca-Chr9 30127786 30138411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01006 2 244 MADS-box Gene Family AT3G58780 69.323 3.05e-123 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Cca09g01006 K-box 3.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01006 K09264 - gmx:100808734 443.736