Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00999 ATGGACAAACATTCTGGAGATTCTTCATCAGCTCATGCTGCTGCAGGTCCATTTGAGATTTCCCCACTTAATGTTCCAAAAAAGGTGGGAAGCAAAGCATGGGGAATACCACGTTCCACTGATGTGTTCCATGATTCAAGTGATGTTAGCTTGTTTTCCAGCTCACTGCCTGTTCTTCCACATGAAAAGTTAGATTTGACTGATTCTGAAAACTATGGTCAACCATTGGATGATAACTTGCTAATGCTAGATAAAGATCACAAAGAGGATGAGGGACATGATCCTTTTGATGATTTTGAAACCAACGCAATTGGGAATATGCTTCCTGATGATGAAGAGGAGCTTTTAGCTGGGATTATGGATGATTTTGACCTAAGTAAATTGCCCAATCAACTGGAAGATTTGGATGAAAATGATCTGTTTGTTAACGGAGGGGGATTTGAGATGGACTTTGAACCCCAAGAGAGCATTAATATTGGTATGTCCAAGATAAGCATATCTGATGGAGTTGCTTCAAATGGTGTTGGTCACTATGCAATCCCAAATGGTGTGGGAACAGTGGCTGGGGAGCATCCCTATGGAGAGCATCCATCAAGGACATTATTTGTTCGAAACATCAACAGTAATGTCGAGGACTCTGAATTACGAACACTATTTGAGCAATATGGGGATATCAGGACTTTGTACACAGCATGCAAGCATAGGGGCTTTGTGATGATATCTTACTACGACATTCGAGCTGCTCGCACTGCCATGCGTGCTTTACAAAACAAGCCTTTGAGACGTAGAAAACTTGATATACATTTTTCAATTCCTAAGGATAACCCCTCGGAAAAAGATATTAATCAAGGAACCCTTGTTGTGTTCAACTTAGATCCTTCAGTATCAAATGATGACCTTCGTCAAATATTTGGGGCTTATGGTGAGGTTAAGGAGATCAGGGAAACACCACATAAGAGACACCATAAATTTATTGAGTTTTATGATGTTAGAGCAGCAGAGGCAGCTCTTAAAGCATTAAATCGAAGTGATATTGCTGGGAAACGCATAAAACTTGAACCCAGTCGCCCTGGTGGAGCACGTAGGAACTTGATGCAACAACTGAGTCAAGAACTGGAACAAGATGAAGCTCGAAGTTTTAGACATCAAGTAGGTTCTCCTGTGGCCAGTTCCCCTCCCGGTTGTTGGGCACAATTTGGTAGTCCAGTCGAACATCCATTAGGTTCTTATAGCAAGTCCCCTGGTATGGGTCATGCCAGTCCCATTAATACCAACCATTTGTCTGGATTGGCTGCAATTCTTTCACCACATGCAACAACTTCTACCAAGATTGCACCGATCGGCAAGGACCCTGGAAGGGCTACAAATCAGATGTTTGCAAACTCCGGATCTACACAAGGAGCAGCTTTTCAGCACTCTATATCCTTTCCTGAGAAAAATGTAAATGCAAGTCCTAGGCCTATACCTACTTTTGGCGAATCAAGTTCAAGTGCATCAAGTATTGGAACACTGTCTGGCCCTCAATTTCTTTGGGGAAGCCCAACTCCTTACTCTGAGCATTCAAACACTTCTGCCTGGTCTTCATCTTCCGTGGGGCGCCCATTTACATCCACTGTCCAGAGGCAGGGTTTCCCATATACTAGTCAGCGCAGTCCTTTTCTCAGCTCTCAGTCCCACCATCATGTAGGATCTGCTCCACCTGGCCTTCCCCTTGAAAGACATTTTAACTACTACTCTGAGTCACCTGAAGCTTCTCTCATGAGTCCTGTTGCATTCGGGAATTTAAATCATAGTGATGGGAATTTTATGGTGAACATGGGTGCTCGCGCATCTGTTGGAGCTGGTGTTGGCCTCTCAGGAAATACCACTGAAATTAGTTCACCCAATTTCAGAATGATGTCGCTGCCTAGGCATGGTTCCTTGTTCCATGGAAATAGTTCGTATTCTGGGCCAGGAGCAATAAACATTGAGGGATTAGCTGAACGTGGACGAAATAGACGACCTGACAATGGTGGGAATCAAATTGATAGTAAGAAGCTTTATCAGCTTGATCTTGACAAAATCATCAATGGTGAAGATACGAGGACTACTTTAATGATTAAAAACATCCCTAACAAGTATACTTCAAAGATGCTGCTTTCCGCCATTGATGAGAACCACCGTGGTACTTATGATTTTCTCTACTTGCCAATTGACTTCAAGAATAAGTGCAATGTGGGTTATGCTTTTATCAATATGGTGTCTCCTTCACACATCATCGCCTTCTTTAAGGCCTTTAATGGGAAAAAGTGGGAGAAGTTCAACAGCGAAAAGGTTGCTTCACTGGCATATGCACGGATACAAGGAAAGGCTGCACTTGTGATGCATTTTCAGAATTCAAGCTTAATGAATGAGGACAAACGGTGCCGGCCAATTCTCTTTCATTCAGAGGGCCAAGATACTGGTGACCAGGAACATTTTCTATCCAGCAATTTGAATATATGCATTCGTCAACCGGATGGATCTTATGCAGGTGATTTGTTGGAGAGCCCGAAGGGCAATTCGGACCAGAAGCTAGAGAGAGATTAA 2568 0.4303 MDKHSGDSSSAHAAAGPFEISPLNVPKKVGSKAWGIPRSTDVFHDSSDVSLFSSSLPVLPHEKLDLTDSENYGQPLDDNLLMLDKDHKEDEGHDPFDDFETNAIGNMLPDDEEELLAGIMDDFDLSKLPNQLEDLDENDLFVNGGGFEMDFEPQESINIGMSKISISDGVASNGVGHYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARSFRHQVGSPVASSPPGCWAQFGSPVEHPLGSYSKSPGMGHASPINTNHLSGLAAILSPHATTSTKIAPIGKDPGRATNQMFANSGSTQGAAFQHSISFPEKNVNASPRPIPTFGESSSSASSIGTLSGPQFLWGSPTPYSEHSNTSAWSSSSVGRPFTSTVQRQGFPYTSQRSPFLSSQSHHHVGSAPPGLPLERHFNYYSESPEASLMSPVAFGNLNHSDGNFMVNMGARASVGAGVGLSGNTTEISSPNFRMMSLPRHGSLFHGNSSYSGPGAINIEGLAERGRNRRPDNGGNQIDSKKLYQLDLDKIINGEDTRTTLMIKNIPNKYTSKMLLSAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIIAFFKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTGDQEHFLSSNLNICIRQPDGSYAGDLLESPKGNSDQKLERD 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00999 855 CDD RRM3_MEI2_like 698 783 IPR034454 -
Cca09g00999 855 PANTHER RNA RECOGNITION MOTIF-CONTAINING 8 850 - -
Cca09g00999 855 PANTHER PROTEIN MEI2-LIKE 2 8 850 - -
Cca09g00999 855 MobiDBLite consensus disorder prediction 1 25 - -
Cca09g00999 855 Gene3D - 188 282 IPR012677 -
Cca09g00999 855 MobiDBLite consensus disorder prediction 546 562 - -
Cca09g00999 855 MobiDBLite consensus disorder prediction 546 567 - -
Cca09g00999 855 CDD RRM1_MEI2_like 198 274 IPR034453 -
Cca09g00999 855 Pfam RNA recognition motif 2 695 791 IPR007201 -
Cca09g00999 855 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 272 IPR000504 GO:0003723
Cca09g00999 855 SUPERFAMILY RNA-binding domain, RBD 196 359 IPR035979 GO:0003676
Cca09g00999 855 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 351 IPR000504 GO:0003723
Cca09g00999 855 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 265 IPR000504 GO:0003723
Cca09g00999 855 MobiDBLite consensus disorder prediction 478 500 - -
Cca09g00999 855 CDD RRM2_MEI2_like 283 353 - -
Cca09g00999 855 Gene3D - 283 381 IPR012677 -
Cca09g00999 855 Gene3D - 689 784 IPR012677 -
Cca09g00999 855 SMART rrm1_1 200 268 IPR000504 GO:0003723
Cca09g00999 855 SMART rrm1_1 697 773 IPR000504 GO:0003723
Cca09g00999 855 SMART rrm1_1 285 353 IPR000504 GO:0003723
Cca09g00999 855 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 357 IPR000504 GO:0003723
Cca09g00999 855 SUPERFAMILY RNA-binding domain, RBD 697 782 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00999 Cca-Chr9 29912727 29922477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00999 194 506 Eukaryotic Initiation Factors Gene Family AT3G16380 23.919 2.75e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00999 - - gmx:100812324 1560.43