Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00996 ATGCCCGAGAAGCAGACCCGCGTCGGTCAGGGCACCCGTTTCAAGGCCTTTGTTGTTGTCGGCGACAACAACAGCCATGTCGGCCTTGGCGTCAAGTGTAGCAAGGAGGTCACCACCGCCATTCGCGGCGCTGTCATCCTCGCTAAGCTCTTCATCATCCCCGTCAAGAGAGCCCCACACCGTTCCCAACACCGCTGCGCGTCATCGCCGTTGCGCGTCGCCGGCGCTGCGTGTTGCCGTCGCTATGCACCGCGGCGCAGTTCTTCTGGGCACCAACGCCGATTCATAAAACATAAGAGGAATGGAAGCTCCTTCTCTCTCCTGATCAGTTTCAGATCCTTTGCCAGAAAATGA 354 0.5847 MPEKQTRVGQGTRFKAFVVVGDNNSHVGLGVKCSKEVTTAIRGAVILAKLFIIPVKRAPHRSQHRCASSPLRVAGAACCRRYAPRRSSSGHQRRFIKHKRNGSSFSLLISFRSFARK 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00996 117 Pfam Ribosomal protein S5, N-terminal domain 4 56 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cca09g00996 117 Gene3D - 1 54 - -
Cca09g00996 117 SUPERFAMILY dsRNA-binding domain-like 4 57 - -
Cca09g00996 117 PANTHER GENE 8225-RELATED 3 76 - -
Cca09g00996 117 PANTHER RIBOSOMAL S SUBUNIT 3 76 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cca09g00996 117 ProSiteProfiles S5 double stranded RNA-binding domain profile. 1 55 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00996 Cca-Chr9 29897746 29898099 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00996 1 58 Cytoplasmic Ribosomal Protein Gene Family AT1G58983 77.966 9.67e-25 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00996 K02981 - gmx:100797105 95.9005