Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00988 ATGTCAGGAAACAGTTCTTTGCATGTGGAATTATCGAAGAAGACTTCATTTttgggattgagattatgggttttgattgggataggtgttggTGCTTTTATAGTTCTGATTCTTTGTGTATTATCTATATGGTTTATGTTTCGGAGAAAGTCTAAGAGATCTCTGGACAAGTACCCTTTATCCCAAATACCACATGTCTCAAAAGATATCAAAGTTGACAAGGTTGGGGTGCAGATGTCTCATGATCAAGCAGAAAGTGTAGCTATTCCTGTTCATGACAAAGCAAATGAGAACAATTCGGATAAGTTGTTAGTTCATTTGCGCATGAGCAAGTCCAGCGATGCTGATAATGTCAGTCAGTGCAGCTCAGTTTATCATCACGAGCGAGGATTTAGTTCAATGTCGGGGGAAGAAGGAAGCTCCGGGACTTTTAAGAAGCACTCTACATTGTCCTATGGAGGAATGGTAACCGCCTCTCCTCTAGTTGGCTTGCCAGAAATATCTCATCTTGGGTGGGGCCACTGGTTTACACTTAGAGATCTGGAACTCGCAACTAATCGCTTCTCTCCTGATAATGTGATTGGTGAGGGTGGATATGGGGTTGTTTACAGGGGAAGATTAGTCAATGGATCTGAGGTGGCAGTGAAGAAAATTCTTAACAACTTGGGACAAGCAGAGAAAGAATTCAGGGTGGAAGTAGAGGCTATTGGCCATGTTAGACATAAAAATCTAGTGCGCTTACTTGGTTATTGTGTAGAAGGAGTTCACAGGTTGCTGGTGTATGAATATGTCAACAATGGTAACTTAGAACAATGGCTACATGGGGCTATGAGCCAACAGGGGACATTTACCTGGGACGCTCGGATGAAGGTTATAACTGGCACAGCCAAAGCGCTAGCTTACTTGCATGAAGCAATAGAACCAAAAGTTGTTCACCGGGATATAAAGTCTAGCAACATATTGATTGATAACGAGTTCAATGCAAAAGTTTCTGACTTTGGTTTAGCCAAACTTTTGGATTCAGGCGAAAGTCACATTACTACTAGAGTAATGGGAACATTTGGTTATGTGGCACCAGAATATGCTAATACGGGTTTGTTAAATGAGAGGAGCGACATTTACAGCTTTGGTGTTCTCCTGCTAGAGGCAGTTACCGGAAGGGATCCTGTGGACTATTCACGTCCTTCTAATGAGGTGAATCTTGTTGAATGGCTCAAGATGATGGTGGGGACAAGGAGGGCCGAAGAAGTTGTGGACTTGAGGCTTGAAGTGAAACCATCAATGCGTGCATTAAAGCGTGCTCTTCTGGTTGCACTTAGGTGTGTTGATCCTGAATCAGAAAAAAGGCCAAAAATGAGTCAGGTTGTAAGGATGCTTGAAGCCGACGAATATCCATTCCGAGAGGATCGAAGAAATAGAAAGAGCCGCACTGCCAGCATGGAAATTGAATCTCTGAAGGATATTTCTGGTCCATCTGATGCTGAAAAGGTGAAGGGTTCTGAAGGATATGCACCAGAAACAACTAAAGGGGAATCAAATCTGAGAAGAGAATCAATGAGGCCATTTTTGTCTGCTTGGGAGTGGAGATGA 1590 0.4176 MSGNSSLHVELSKKTSFLGLRLWVLIGIGVGAFIVLILCVLSIWFMFRRKSKRSLDKYPLSQIPHVSKDIKVDKVGVQMSHDQAESVAIPVHDKANENNSDKLLVHLRMSKSSDADNVSQCSSVYHHERGFSSMSGEEGSSGTFKKHSTLSYGGMVTASPLVGLPEISHLGWGHWFTLRDLELATNRFSPDNVIGEGGYGVVYRGRLVNGSEVAVKKILNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCVEGVHRLLVYEYVNNGNLEQWLHGAMSQQGTFTWDARMKVITGTAKALAYLHEAIEPKVVHRDIKSSNILIDNEFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGLLNERSDIYSFGVLLLEAVTGRDPVDYSRPSNEVNLVEWLKMMVGTRRAEEVVDLRLEVKPSMRALKRALLVALRCVDPESEKRPKMSQVVRMLEADEYPFREDRRNRKSRTASMEIESLKDISGPSDAEKVKGSEGYAPETTKGESNLRRESMRPFLSAWEWR 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00988 529 PANTHER OS01G0323000 PROTEIN 2 506 - -
Cca09g00988 529 PANTHER RECEPTOR-LIKE KINASE PLANT 2 506 - -
Cca09g00988 529 Gene3D Phosphorylase Kinase; domain 1 169 263 - -
Cca09g00988 529 Gene3D Transferase(Phosphotransferase) domain 1 264 477 - -
Cca09g00988 529 SMART serkin_6 188 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00988 529 MobiDBLite consensus disorder prediction 488 502 - -
Cca09g00988 529 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Cca09g00988 529 Pfam Protein kinase domain 191 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00988 529 ProSitePatterns Protein kinases ATP-binding region signature. 194 217 IPR017441 GO:0005524
Cca09g00988 529 ProSiteProfiles Protein kinase domain profile. 188 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00988 529 SUPERFAMILY Protein kinase-like (PK-like) 172 461 IPR011009 -
Cca09g00988 529 CDD STKc_IRAK 194 460 - -
Cca09g00988 529 MobiDBLite consensus disorder prediction 469 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00988 Cca-Chr9 29647423 29651194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00988 19 462 Trihelix Transcription Factor Family AT1G70460 39.648 2.51e-94 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Cca09g00988 Pkinase 6.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00988 - - gmx:100813931 926.006
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00988 09 29647423 29651194 Cca09g00988 09 29647423 29651194 ECH
Cca09g00988 09 29647423 29651194 Cca05g01876 05 38584826 38590874 PCT
Cca05g01228 05 29878032 29882581 Cca09g00988 09 29647423 29651194 PCT