Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00962 ATGAATGCTAAGGTATCTACATCCGATGATACCAAGAAAGATGAAGAAATTGTGCTTCCTGGCTTTAGATTCCACCCCACAGATGAAGAGCTTGTTGGGTTTTATTTGCTGAGGAAGGTGGAAAAGAAGCCTCTTCGAATTGAACTCATCAAACAGGTTGATATCTACAAATATGATCCATGGGATCTTCCAAAAGTGAATTCTGTGGGGGACAAAGAGTGGTATTTTTTCTGCATAAGAGGGAGAAAGTACAGGAACAGCGTGAGGCCTAACAGGGTAACTAGGTCAGGGTTCTGGAAAGCCACAGGGATTGATAAGAACATATATTGTGTGAAAGAACCCCATGAATGCATTGGTCTCAAGAAGTCATTGGTCTACTATCGTGGAAGTGCTGGCAAAGGCACCAAAACTGACTGGATGATGCATGAGTTTCGTCTTCCACCCAATGCAAAATCCACCAACAATACCAATGACCTTCAAGAAGCTGAGGTGTGGACACTGTGCAGGATATTCAAACGCACCCCATCTTTCAAAAAGTACACTCCAAATTTGAAAGAGTCAACAACACCTGTCACCAAACCAAACCCTGTGAATTCCAACACATGCACCCTAGATTCTGAAAATTGCAAGCCATATTTGATTTGCAGAGACCCCCTAGGGATGCAACAAATAGAAAGAAAACCGGTTATTGGACAGGTTGATGAAAAGAAGCACTTGTTTCTGGGCCAGTTTGCCCCAATACCCCATCATCATCAGGCCCCACCAAACCCATACCCAAGTTTTTGGAATCAGAATGTTGAGGACTATGCATTTGCAAATGAGAATTGGGATGACCTAAGATCTGTGGTTCAGTTTGCAATTGATCCATCCACGGTGTTTGATTGTACAGAAGCATATGTTCCACCCTACTTTTCTTAG 918 0.4281 MNAKVSTSDDTKKDEEIVLPGFRFHPTDEELVGFYLLRKVEKKPLRIELIKQVDIYKYDPWDLPKVNSVGDKEWYFFCIRGRKYRNSVRPNRVTRSGFWKATGIDKNIYCVKEPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNAKSTNNTNDLQEAEVWTLCRIFKRTPSFKKYTPNLKESTTPVTKPNPVNSNTCTLDSENCKPYLICRDPLGMQQIERKPVIGQVDEKKHLFLGQFAPIPHHHQAPPNPYPSFWNQNVEDYAFANENWDDLRSVVQFAIDPSTVFDCTEAYVPPYFS 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00962 305 Pfam No apical meristem (NAM) protein 20 146 IPR003441 GO:0003677|GO:0006355
Cca09g00962 305 SUPERFAMILY NAC domain 16 172 IPR036093 GO:0003677|GO:0006355
Cca09g00962 305 ProSiteProfiles NAC domain profile. 18 173 IPR003441 GO:0003677|GO:0006355
Cca09g00962 305 Gene3D NAC domain 27 177 IPR036093 GO:0003677|GO:0006355
Cca09g00962 305 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 297 - -
Cca09g00962 305 PANTHER - 6 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00962 Cca-Chr9 28628720 28635276 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00962 8 174 NAC Transcription Factor Family AT5G39820 58.696 3.86e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca09g00962 NAM 3.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00962 - - gmx:100810472 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00962 09 28628720 28635276 Cca09g00962 09 28628720 28635276 ECH