Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00960 ATGGTTGTGAAAGTCTATGGTTCAGACTATGCTAACCCAAAGCGGGTGATAATGTGCCTCATTGAGAAGGAAATCGAGTTTGAGACAGTGTTTGTTGATGGCTTCAAGGGAGAGAATAAAAAGCCTGAGTACCTCAAGTTGCAGCCTTTTGGATTGCTTCCTGCTATTCAAGATGGTGATTACACCCTTTATGAATCAAGAGCAATATGCAGGTACTATGCTGAAAAGTACAAAAACCAAGGGACTGATTTATTAGGGAAGACAATAGAAGAAAGGGGTCTCGTGGAGCAATGGCTTGAAGTTGAAGCCCATAATTATCACCCACCACTCTACAATTTGGTAATGAATATTGTGATTTCCCCTTTATTGGGTCTTCCATCAGACCCAAAAGTTATCAAAGAGAGTGAAGAGAAGCTTGGGAAGGTACTTGACATTTATGAGGAGAGGCTATCCAAGACAAAGTATTTGGCAGGTGACTTCTTCAGCCTTGCTGATCTTAGCCATCTCCCATTTACTCATTATTTGAGTCAAATGAAAAAGGAGTATTTGATTAGAGAAAGGGTGCATGTGAGTGCTTGGTTGGATGATATTAGCAACAGGCCATCTTGGAAGAAGGTTCTCGAACTATCCAAAAACCCTTTCTAA 645 0.4078 MVVKVYGSDYANPKRVIMCLIEKEIEFETVFVDGFKGENKKPEYLKLQPFGLLPAIQDGDYTLYESRAICRYYAEKYKNQGTDLLGKTIEERGLVEQWLEVEAHNYHPPLYNLVMNIVISPLLGLPSDPKVIKESEEKLGKVLDIYEERLSKTKYLAGDFFSLADLSHLPFTHYLSQMKKEYLIRERVHVSAWLDDISNRPSWKKVLELSKNPF 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00960 214 CDD GST_N_Phi 2 76 - -
Cca09g00960 214 SFLD Main (cytGST) 5 200 - -
Cca09g00960 214 Gene3D Glutaredoxin 1 85 - -
Cca09g00960 214 PANTHER GLUTATHIONE S-TRANSFERASE 2 213 - -
Cca09g00960 214 SUPERFAMILY GST C-terminal domain-like 78 207 IPR036282 -
Cca09g00960 214 SFLD Glutathione Transferase (cytosolic) 5 200 IPR040079 -
Cca09g00960 214 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 214 IPR010987 -
Cca09g00960 214 Gene3D - 86 207 - -
Cca09g00960 214 SUPERFAMILY Thioredoxin-like 2 81 IPR036249 -
Cca09g00960 214 Pfam Glutathione S-transferase, C-terminal domain 113 201 IPR004046 -
Cca09g00960 214 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 81 IPR004045 -
Cca09g00960 214 Pfam Glutathione S-transferase, N-terminal domain 2 74 IPR004045 -
Cca09g00960 214 CDD GST_C_Phi 90 207 IPR034347 -
Cca09g00960 214 PANTHER GLUTATHIONE S-TRANSFERASE RHO 2 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00960 Cca-Chr9 28475113 28476057 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00960 1 206 Glutathione S-transferase Gene Family AT2G30870 62.319 1.65e-94 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00960 K00799 - gmx:100809406 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00960 09 28475113 28476057 Cca09g00960 09 28475113 28476057 ECH