Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00950 ATGTCAGCGTCGTCGCACTATTTTCACAGGAATTACTTCAACCCTAACACGTTCTCCACCTCTATTGTTGCCGCTGCCGTCATGGCGCAGCTGAGAAACCGCGCGGAAGATGACTTGAACTTGTACCACCTCCTTTTTCCCACCGTGGACTACACGCTCCCAATTCACCAAAATTCGTTGCTTTTGATTCAGCTAACGAGGTTCTCCTGCGGCGGCGTCAGCATCGGCATCACGATTTCGCATGTGGTGGTGAACGGAACCAGCGCCTCGCACTTCGTTTGCGAGTGGGCGAGGCTGGCGCGCGGGGAGCCTCTGCAAACGGCGCTGTTTCATGACCGGAAGGTGTTGCGCGGCGGGGAGCCTCCTTCGATGCCGCTAACGGAATGCCACGTGCACGCGGAGTTTGATCGCCCTCCATTGATGCTCGGGAAAAACGACAACGCCGAGCATGTTGGAGAACAGCGATTTTGA 471 0.5626 MSASSHYFHRNYFNPNTFSTSIVAAAVMAQLRNRAEDDLNLYHLLFPTVDYTLPIHQNSLLLIQLTRFSCGGVSIGITISHVVVNGTSASHFVCEWARLARGEPLQTALFHDRKVLRGGEPPSMPLTECHVHAEFDRPPLMLGKNDNAEHVGEQRF 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00950 156 PANTHER SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE-RELATED 40 149 - -
Cca09g00950 156 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 40 149 - -
Cca09g00950 156 Pfam Transferase family 38 129 - -
Cca09g00950 156 Gene3D - 12 136 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00950 Cca-Chr9 28130805 28131402 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00950 39 122 Monolignol Biosynthesis Gene Families AT5G48930 42.857 4.36e-16 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00950 K13065 - gmx:100777532 171.4