Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00949 ATGGTGCCTAATTTTCTCATTGCAAGATTAATTGCATCATCATTAACACGCTACAAGAGCACCCATTTCCTGTTGGGTTCACATTCTCTGCTGCAACACAAACACAATGCTTCACTTTTTCTCTTCAATTCATACACTTCTGGTGCAATCCACCCCAAAGGTGACACCTTTACAGTGTCTTACCTCGTCAACTCATGTGGGGTGTCCCCAACACTGGCCAAGGAACTCTCCAAAAGGGTCAATTTGAAAACCCCAGATGGCCCAAATGCTGTTATTGATCTTCTCAGCAACTATGGGTTCTCCAAAACCCAGATTGCAAAACTTGTGGAAAAGCATCCCTTGGTGCTTGTTGCAAAGGCAGAAAATACCCTTTTGCCTAAACTCAAGTTCTTGAGATCTATTGGGGTTTCCAATACTGATCTTCCTAAGATTCTGCTTCGAAACCATGTTATATTGATGTGTAGCTTGGAAAATTTCCTCATCCCACGTTATGAGATCCTCCGGGGTATAGTTCAGGATGACCAGAAAGTTGTTAGAATTTTGAAAAGTGCTGCATATAATATTACATATGCTGACGTGTTGAAAACCTTGGTTCCAAACATTAATGTTTTGAGGCAATCTAGTGTGCCTCAGGCTTCCATCTCTCTCTTGATGGTCTATTTTTCTAATACAGCACATATGAAGCATTCCAAATTTTTGGAAGCTCTCAAGACAGCAAGGGGAATTGGGTTTGATCCATCGAAAACAAATTTAATACATGCTCTCGTTGTGCTTTTAAATACTAACAAAACAATGCAGGATTCAAAGTTTAAGGTTTATGAGAGGTGGGGTTGGAACCACAAATTGGCTCTTCAAGCATTTAGGAAGTTTCCCGTTTTTATGATGTTGTCAAAGGAGACATATTCAAAAAAAATGAGTTTCCTAGTGAATGATATGGGTTTGCCATCAGAAGATATTGCTGAATATGCTCAGTATACTTATTTTCATCGCTACCTTTTGCCTAAACTCACGTTCTTCCGTTCTATTGGGTTTTCCGACGCTGACATCCCTAAGATCCTGATTGCTAACTACACCATCTTGTTAAGAAGCTTGGAAAAATTCCTCATCCCACGTTGTGAGGTCCTCAGGCAATCTGGTGTGCCCCAAGCTTCCATCTCTTACATGATGATCCATTCTGGGAATCTAGCCTACTGGACGCATTCCAAATTTGTGGAAGCTGTCAACACTGCGAAGGAAGTTGGGTTTAGTCCTTTGAGAACAAGTTTTATCGTGGCCATTGAAATGCTAATTAAGAGCAAAGTAGTGTGGGAATCAAAGTTTGAGATTTATGAGAGGTGGGGCTGGAACTGTGAAACGGTGCTTAGAGCATTTCGAAAGTTTCCCAATTTTATGAAGTTGTCAGAGGAGAATTTTACCAAAAAAATGAGTTTCCTTGTGAAGGATATGGGTTGGCCATCAGAAGATATTGCTGAATATCCTCTAGTTGTAGCGTACAACTTGGAGAAGAGGATTATCCCTAGATTCTCGGTAATCAAAATCTTGAAATCAAAAGGTCTGCTTGAGAATAATGTGCACTTTAGTGGCATTATTTGCATAACTGATGAAGATTTTTTGGAGAAATTTGTCGACAATTTTAAGAAAGATTTGCCTCTCTTGCCAGATGTCTACAACAGTTTGATTAATGAACAGAATGTAATATAA 1701 0.3962 MVPNFLIARLIASSLTRYKSTHFLLGSHSLLQHKHNASLFLFNSYTSGAIHPKGDTFTVSYLVNSCGVSPTLAKELSKRVNLKTPDGPNAVIDLLSNYGFSKTQIAKLVEKHPLVLVAKAENTLLPKLKFLRSIGVSNTDLPKILLRNHVILMCSLENFLIPRYEILRGIVQDDQKVVRILKSAAYNITYADVLKTLVPNINVLRQSSVPQASISLLMVYFSNTAHMKHSKFLEALKTARGIGFDPSKTNLIHALVVLLNTNKTMQDSKFKVYERWGWNHKLALQAFRKFPVFMMLSKETYSKKMSFLVNDMGLPSEDIAEYAQYTYFHRYLLPKLTFFRSIGFSDADIPKILIANYTILLRSLEKFLIPRCEVLRQSGVPQASISYMMIHSGNLAYWTHSKFVEAVNTAKEVGFSPLRTSFIVAIEMLIKSKVVWESKFEIYERWGWNCETVLRAFRKFPNFMKLSEENFTKKMSFLVKDMGWPSEDIAEYPLVVAYNLEKRIIPRFSVIKILKSKGLLENNVHFSGIICITDEDFLEKFVDNFKKDLPLLPDVYNSLINEQNVI 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00949 566 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 30 325 - -
Cca09g00949 566 SMART mt_12 142 173 IPR003690 GO:0003690|GO:0006355
Cca09g00949 566 SMART mt_12 106 137 IPR003690 GO:0003690|GO:0006355
Cca09g00949 566 SMART mt_12 284 315 IPR003690 GO:0003690|GO:0006355
Cca09g00949 566 SMART mt_12 350 381 IPR003690 GO:0003690|GO:0006355
Cca09g00949 566 SMART mt_12 454 485 IPR003690 GO:0003690|GO:0006355
Cca09g00949 566 SMART mt_12 486 520 IPR003690 GO:0003690|GO:0006355
Cca09g00949 566 PANTHER CGI-12 PROTEIN-RELATED 369 558 IPR003690 GO:0003690|GO:0006355
Cca09g00949 566 PANTHER CGI-12 PROTEIN-RELATED 30 325 IPR003690 GO:0003690|GO:0006355
Cca09g00949 566 Gene3D Transcription termination factor 3, mitochondrial 62 192 IPR038538 -
Cca09g00949 566 Gene3D Transcription termination factor 3, mitochondrial 326 549 IPR038538 -
Cca09g00949 566 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 369 558 - -
Cca09g00949 566 PANTHER CGI-12 PROTEIN-RELATED 330 377 IPR003690 GO:0003690|GO:0006355
Cca09g00949 566 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 330 377 - -
Cca09g00949 566 Pfam mTERF 92 366 IPR003690 GO:0003690|GO:0006355
Cca09g00949 566 Pfam mTERF 432 538 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00949 Cca-Chr9 28123824 28126288 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Cca09g00949 mTERF 9.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00949 K15032 - gmx:100788793 428.713