Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00948 ATGGTTCCCAAATTCCTCATTGCAAGATTATCTCTATCATTCACACACCACAGGAGTACCCATTTCCAATTGCTGCAACCCAAACACAATGCTATCCTTTTGTTCTTCAATTCATTCACTTCAGGCACCTCTTCTGATTCTGAATCAGATGGAAACCACCCTAAAGGTGACACCTTTACTGTGTCTTACCTCATCAACTCATGTGGGGTGTCCCCAACAGTGGCTAAGGAACTCTCCAAAAGGGTCAATTTGAAAACCCCAGATGGCCCAAATGCTGTTCTTGATCTTCTCAACAACTATGGGTTCTCAAAAACCCAGCTTGCAAAACTTGTAATGAGACACCCTTTTGTGCTTGGTTCAAATGCAGAGAATACCCTTTTGCCTAAACTCAAGTTTTTACAATCCATTGGGGTTTCTAACAGTGACATGCCTAAAATCGTCATTAATAGTCAGCATATCTTGTTCAGAAACTTGGAAAAATGCCTCATTCCGCGCTATGAGATCCTAAAGAGTGTACTTCGTGACGATGGGGAAGTTGTAAGAGCTTTGAAAAACGCCCCTTTTGCTTTTACTTATAGTGGCGTGGTGAATTACTTGGTTCCAAACATTGAGGTTTTGAGGCAATGTGGTGTGCCCCAAGGTTCCATCTCTTACATGATGATCCATTGTGGGAGTGTAGCCTACAGGAACCATTCTAAGTTTATGGAAGCTGTCAACACTGCTAAGGAAATTGGGTTTGATCCTTTGAAAACAGCGTTCATAGTGGCTATTGAAATGCTTCTAACTAAGAGCAAAGAAACATGGGAATCAAAGTTTGGGATTTATGAGAGGTGGGGCTGGAACCGTGAAATGGCTCTTCGAGCATTTCGTAAGTTTCCCGGTGTTATGAAGTTGTCAGAGGAGACGTTTACCAAAAAAATGAGTTTCCTAGTGAAGGATATGGGTTGGTCACCAGAAGATATTGCTGAATACCCTGTAGTTATGGGGTACAACTTGGAGAAGAGGATTATCCCTAGATTCTCGGTAATCAAAATCTTGATATCAAAAGGAAAATTTGCCTCTCTTGCCAAATGTCTACAACAGTTTGATCAATGCTCAGAGTGTAATTTAGTCTTCGAAGATTTTTGCTGGTTTAATCATTTATCCTATAAAAGGGACATTAGAGCACGTGTTAACACACCAAAATTGAGAAGTTCCTTTTCTTTCAGgatcaccatcatatag 1224 0.4028 MVPKFLIARLSLSFTHHRSTHFQLLQPKHNAILLFFNSFTSGTSSDSESDGNHPKGDTFTVSYLINSCGVSPTVAKELSKRVNLKTPDGPNAVLDLLNNYGFSKTQLAKLVMRHPFVLGSNAENTLLPKLKFLQSIGVSNSDMPKIVINSQHILFRNLEKCLIPRYEILKSVLRDDGEVVRALKNAPFAFTYSGVVNYLVPNIEVLRQCGVPQGSISYMMIHCGSVAYRNHSKFMEAVNTAKEIGFDPLKTAFIVAIEMLLTKSKETWESKFGIYERWGWNREMALRAFRKFPGVMKLSEETFTKKMSFLVKDMGWSPEDIAEYPVVMGYNLEKRIIPRFSVIKILISKGKFASLAKCLQQFDQCSECNLVFEDFCWFNHLSYKRDIRARVNTPKLRSSFSFRITII 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00948 407 Pfam mTERF 262 363 IPR003690 GO:0003690|GO:0006355
Cca09g00948 407 Pfam mTERF 94 304 IPR003690 GO:0003690|GO:0006355
Cca09g00948 407 PANTHER CGI-12 PROTEIN-RELATED 35 350 IPR003690 GO:0003690|GO:0006355
Cca09g00948 407 SMART mt_12 286 317 IPR003690 GO:0003690|GO:0006355
Cca09g00948 407 SMART mt_12 108 139 IPR003690 GO:0003690|GO:0006355
Cca09g00948 407 SMART mt_12 180 212 IPR003690 GO:0003690|GO:0006355
Cca09g00948 407 SMART mt_12 318 352 IPR003690 GO:0003690|GO:0006355
Cca09g00948 407 SMART mt_12 144 175 IPR003690 GO:0003690|GO:0006355
Cca09g00948 407 SMART mt_12 251 281 IPR003690 GO:0003690|GO:0006355
Cca09g00948 407 Gene3D Transcription termination factor 3, mitochondrial 162 367 IPR038538 -
Cca09g00948 407 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 35 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00948 Cca-Chr9 28102930 28109298 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Cca09g00948 mTERF 1.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00948 K15032 - gmx:100775533 500.36