Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00947 ATGCAGCAAGTTGCGTTGTGCCCTCGGCAATTACTTTGCAAAGAAGAGGAAGTGGTTGCAGCGTTGAAACGCGTATCTGGATTTCACGTGCTTTGCGTATGCTGTGAAACATTACATTACTTGAGACACCGAAGCATTCAAATCTATGGAAACCACCCCAAAGGTGACACCTTTAGCGTGTCTTACCTCATCAACTCATGTGGGGTGTCCCCAACAGTGGCTAAGGAACTCTCCAAAAGGGTCAATTTGAAAACCCCAGATGGCCCAAATGCTGTTATTGATCTTCTCAACAACTATGGGTTCTCAAAAACCCAGCTTGCAAAATTTGTAATGAAACACCCTTTTGTGCTTGTTGCAAATGCAGAGAAAACCCTTTTGCCTAAACTCGAGTTCTTGCGTTCTATTGGTGTCTCCAACAGCGACATCCCCAAGATCCTCATTGCTAACCATTCTATCTTGAAGAGGAACTTGAAAAAATGTCTCATCCCTCGTTATGAGATCTTAAAGAGATTAGTTCGTGATGACCAGGAAGTTGTTAGAGCTTTGAAAAATTGCCCACTTGGTTTTGTGTATGGTGGCGTAATGAATGACTTGGTTCCAAACATTGAAGTTTTGAGGCAATCTGGTGTGCCTCAGGCTTCTATCTCTCTCTTGATGATCAATGCTCTGTCTGCAGCACATGTGGAGCATTCTAGATTTGTGGAAGTCGTCAAGAAAGTTAAGGAAATTGGGTTTTGTCCTTCGAGAACAAATTTTGTCATGGCTATTAATGTTCTTGTAAATATGAGGAAAGAAGTGTGGGACTCAAGGTTTGAGGCTTATGAAAAGTGGGGCTGGAACCGTGAAATGGCTCTTCGAGCATTCACAAAGTTTCCGGGTTTTATGAAGTTGACTGAGAAGACTTTTACTAGAAAAATGAGTTTCCTAGTGAATGATATGGGTTGGCCATCAGAAGCTATTGCTGAATACCCTGTAGTTGTAGCTTACAACTTGGAGAAGAGGATTATCCCTAGATTCTCGGTAATCAAAATCTTGATATCAAAAGGTCTGCTTGAGAATGATGTGCACTTTAGTGGCATTATTTGCATAACTGAGGAAAACTTTTTGGAGAAATTTGTCATCAATTTTCAGAATGTTCTGCCCCTCTTACCAGATGTCTACAGAGGTGTGATCAATCCATCAAATGTGATGTAG 1194 0.4137 MQQVALCPRQLLCKEEEVVAALKRVSGFHVLCVCCETLHYLRHRSIQIYGNHPKGDTFSVSYLINSCGVSPTVAKELSKRVNLKTPDGPNAVIDLLNNYGFSKTQLAKFVMKHPFVLVANAEKTLLPKLEFLRSIGVSNSDIPKILIANHSILKRNLKKCLIPRYEILKRLVRDDQEVVRALKNCPLGFVYGGVMNDLVPNIEVLRQSGVPQASISLLMINALSAAHVEHSRFVEVVKKVKEIGFCPSRTNFVMAINVLVNMRKEVWDSRFEAYEKWGWNREMALRAFTKFPGFMKLTEKTFTRKMSFLVNDMGWPSEAIAEYPVVVAYNLEKRIIPRFSVIKILISKGLLENDVHFSGIICITEENFLEKFVINFQNVLPLLPDVYRGVINPSNVM 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00947 397 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 34 389 - -
Cca09g00947 397 SMART mt_12 317 351 IPR003690 GO:0003690|GO:0006355
Cca09g00947 397 SMART mt_12 107 138 IPR003690 GO:0003690|GO:0006355
Cca09g00947 397 SMART mt_12 179 211 IPR003690 GO:0003690|GO:0006355
Cca09g00947 397 SMART mt_12 285 316 IPR003690 GO:0003690|GO:0006355
Cca09g00947 397 SMART mt_12 143 174 IPR003690 GO:0003690|GO:0006355
Cca09g00947 397 PANTHER CGI-12 PROTEIN-RELATED 34 389 IPR003690 GO:0003690|GO:0006355
Cca09g00947 397 Gene3D Transcription termination factor 3, mitochondrial 63 193 IPR038538 -
Cca09g00947 397 Gene3D Transcription termination factor 3, mitochondrial 194 379 IPR038538 -
Cca09g00947 397 Pfam mTERF 259 368 IPR003690 GO:0003690|GO:0006355
Cca09g00947 397 Pfam mTERF 93 302 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00947 Cca-Chr9 28081568 28084703 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Cca09g00947 mTERF 5.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00947 K15032 - gmx:100786641 546.199