Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00946 ATGGTGCCTAATTTTCTCATTGCAAAATTAATTGCATCATCATTAACACGCTACAAGATCACCCATTTCCTATTGGGTTCACATTCTCTGCTGCAACACAAACACAAAGCTTCACTTTTTCTCTTCAATTCATTCACTTCTGGTGCAATCCACCCCAAAGGTGACACCTTTACAGTGTCTTACTTGGTCAACTCATGTGGGGTGTCCCCAACACTGGCCAAGGAACTCTCCAAAAGGGTCAATTTGAAAACCCCAGATGGCCCAAATGCTGTTATTGATCTTCTCAGCAACTATGGGTTCTCCAAAACCCAGATTGCAAAACTTGTGGAAAAGCATCCCTTGGTGCTTGTTGCAAAGGCAGAAAATACCCTTTTGCCTAAACTCAAGTTCTTGAGATCTATTGGGGTTTCCAATACTGATCTTCCTAAGATTCTGCTTCGAAACCATGCTATATTGATGTGTAGCTTGGAAAATTTCCTCATCCCACGTTATGAGATCCTCCGGGGTATAGTTCAGGATGATCAGAAAGTTGTTAGAACTTTGAAAAGTGCTGCATATAATATTACATATTCTGACGTGTTGAAAACCATGGTTCCAAACATTAATGTTTTGAGGCAATCCGGTGTGCCTCAAGCTTCTATCTCTCTCTTGGTGGTCCATTATCCTTGTGCTGCGTATGTGAAGCATTTCAAATTCGTGGAAGCTGTCGAGACAGTTAAGGAAATTGGGTTTAGTCCTTTGAAAACTAACTTTGTCCTGGGTGTCCAAGTGCTTTTAACTATGAGAAAAACAGTGTGGAAGTCAAGACTTGAGCTTTATGAGAGGTGGGGTTGGAACGATGTAATGTTTCATGAAGCATTTAGAATGTTTCCCAATTTTGTGAAGTTGTCAAATGCTATGTTTACTAGAAAAATGAGTTTCTTAGTGAAGGATATGGGTTTGTCATCAGAAGATATTGCTAAATATCCTCCAGTTCTAGCCTACAGCTTGGAGAAGAGGATCATCCCTAGATTCTCTGTAATTAAAATCTTGAAATCAAAAAGTCTGCTCAAGAATAGTTTTCACTTCAGTTCCTTTATGAATGTAACTGAGCAATTTTTTTTGGAGAAATTTGTCATCAACTTTCAGAAAGATTTGCCTGTTTTAGCAAATGTCTACAAAGGTTTGATAGATTCTCAGAAGGTAATGTAG 1191 0.3896 MVPNFLIAKLIASSLTRYKITHFLLGSHSLLQHKHKASLFLFNSFTSGAIHPKGDTFTVSYLVNSCGVSPTLAKELSKRVNLKTPDGPNAVIDLLSNYGFSKTQIAKLVEKHPLVLVAKAENTLLPKLKFLRSIGVSNTDLPKILLRNHAILMCSLENFLIPRYEILRGIVQDDQKVVRTLKSAAYNITYSDVLKTMVPNINVLRQSGVPQASISLLVVHYPCAAYVKHFKFVEAVETVKEIGFSPLKTNFVLGVQVLLTMRKTVWKSRLELYERWGWNDVMFHEAFRMFPNFVKLSNAMFTRKMSFLVKDMGLSSEDIAKYPPVLAYSLEKRIIPRFSVIKILKSKSLLKNSFHFSSFMNVTEQFFLEKFVINFQKDLPVLANVYKGLIDSQKVM 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00946 396 Pfam mTERF 263 367 IPR003690 GO:0003690|GO:0006355
Cca09g00946 396 Pfam mTERF 92 245 IPR003690 GO:0003690|GO:0006355
Cca09g00946 396 SMART mt_12 284 315 IPR003690 GO:0003690|GO:0006355
Cca09g00946 396 SMART mt_12 106 137 IPR003690 GO:0003690|GO:0006355
Cca09g00946 396 SMART mt_12 249 279 IPR003690 GO:0003690|GO:0006355
Cca09g00946 396 SMART mt_12 316 350 IPR003690 GO:0003690|GO:0006355
Cca09g00946 396 SMART mt_12 142 173 IPR003690 GO:0003690|GO:0006355
Cca09g00946 396 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 30 389 - -
Cca09g00946 396 Gene3D Transcription termination factor 3, mitochondrial 173 379 IPR038538 -
Cca09g00946 396 PANTHER CGI-12 PROTEIN-RELATED 30 389 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00946 Cca-Chr9 28074013 28075203 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Cca09g00946 mTERF 1.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00946 K15032 - gmx:100786641 494.967